Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 141389 Cluster 61086 Cluster 1815 Cluster 8793 Cluster 12785 Cluster 2721 Cluster 16559 Cluster 7549 Cluster 11542 Cluster 4530 Cluster 9430 Cluster 0376 Cluster 3355 Cluster 5313 Cluster 15238 Cluster 10182 Cluster 1348
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.22804 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 NV2.14263 6.06 26.3 100.0% feature · violin
Cluster 15 2 NV2.2595 6.20 26.0 99.6% feature · violin
Cluster 15 3 NV2.18099 5.00 25.8 100.0% feature · violin
Cluster 15 4 NV2.1052 5.18 25.7 100.0% feature · violin
Cluster 15 5 NV2.5890 6.04 25.6 100.0% feature · violin
Cluster 15 6 NV2.14621 5.98 25.6 98.7% feature · violin
Cluster 15 7 NV2.9419 6.37 25.5 99.6% feature · violin
Cluster 15 8 NV2.25140 6.25 25.4 97.9% feature · violin
Cluster 15 9 NV2.23418 7.69 25.4 97.9% feature · violin
Cluster 15 10 NV2.12604 4.09 25.4 100.0% feature · violin
Cluster 15 11 NV2.18097 7.91 25.4 97.1% feature · violin
Cluster 15 12 NV2.19065 5.41 25.3 100.0% feature · violin
Cluster 15 13 NV2.4812 5.20 25.1 98.7% feature · violin
Cluster 15 14 NV2.11657 6.39 25.1 96.2% feature · violin
Cluster 15 15 NV2.22355 6.83 25.0 96.6% feature · violin
Cluster 15 16 NV2.20475 6.71 24.8 96.2% feature · violin
Cluster 15 17 NV2.8037 4.82 24.8 98.3% feature · violin
Cluster 15 18 NV2.14187 4.43 24.7 100.0% feature · violin
Cluster 15 19 NV2.20474 8.03 24.6 94.1% feature · violin
Cluster 15 20 NV2.19669 3.76 24.6 99.6% feature · violin
Cluster 15 21 NV2.22963 3.35 24.3 98.3% feature · violin
Cluster 15 22 NV2.16600 9.88 24.0 91.2% feature · violin
Cluster 15 23 NV2.3891 5.76 24.0 100.0% feature · violin
Cluster 15 24 NV2.12560 4.31 23.8 94.5% feature · violin
Cluster 15 25 NV2.15882 7.36 23.7 91.2% feature · violin
Cluster 15 26 NV2.17964 9.20 23.7 90.3% feature · violin
Cluster 15 27 NV2.17917 4.81 23.5 92.9% feature · violin
Cluster 15 28 NV2.15076 5.14 23.5 92.9% feature · violin
Cluster 15 29 NV2.13257 4.45 23.5 94.1% feature · violin
Cluster 15 30 NV2.3488 4.29 23.2 94.1% feature · violin
Cluster 15 31 NV2.22804 3.43 23.1 99.2% feature · violin
Cluster 15 32 NV2.2977 3.07 23.1 96.2% feature · violin
Cluster 15 33 NV2.22508 4.23 23.0 100.0% feature · violin
Cluster 15 34 NV2.3955 5.12 23.0 89.9% feature · violin
Cluster 15 35 NV2.3892 4.96 22.8 92.4% feature · violin
Cluster 15 36 NV2.20410 4.14 22.8 92.0% feature · violin
Cluster 15 37 NV2.8804 5.72 22.8 89.9% feature · violin
Cluster 15 38 NV2.472 8.37 22.7 86.6% feature · violin
Cluster 15 39 NV2.9040 2.71 22.6 99.2% feature · violin
Cluster 15 40 NV2.16313 8.73 22.6 86.1% feature · violin
Cluster 15 41 NV2.14826 2.57 22.6 100.0% feature · violin
Cluster 15 42 NV2.9713 2.84 22.4 100.0% feature · violin
Cluster 15 43 NV2.18467 3.33 22.4 100.0% feature · violin
Cluster 15 44 NV2.18156 2.54 22.3 98.7% feature · violin
Cluster 15 45 NV2.25210 2.69 22.3 100.0% feature · violin
Cluster 15 46 NV2.6333 2.83 22.2 100.0% feature · violin
Cluster 15 47 NV2.17963 8.84 22.1 84.0% feature · violin
Cluster 15 48 NV2.13111 2.80 22.1 100.0% feature · violin
Cluster 15 49 NV2.17856 2.56 22.1 100.0% feature · violin
Cluster 15 50 NV2.21707 3.20 22.0 99.6% feature · violin
TOP