Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.25721 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 XP_048589508.1 (NV2.2148) 4.45 34.0 96.7% feature · violin
Cluster 11 2 XP_048584350.1 (NV2.2149) 3.56 33.3 97.4% feature · violin
Cluster 11 3 XP_001625804.3 (NV2.2150) 3.38 30.7 93.2% feature · violin
Cluster 11 4 NV2.3687 not mapped 3.37 29.5 93.5% feature · violin
Cluster 11 5 XP_032224739.1 (NV2.4522) 3.91 29.2 85.1% feature · violin
Cluster 11 6 NV2.15834 not mapped 4.33 28.7 80.8% feature · violin
Cluster 11 7 XP_048589622.1 (NV2.3689) 3.40 27.6 98.9% feature · violin
Cluster 11 8 XP_001623996.1 (NV2.9419) 3.13 26.9 85.4% feature · violin
Cluster 11 9 XP_032243305.2 (NV2.1307) 4.39 26.1 72.9% feature · violin
Cluster 11 10 XP_032236039.2 (NV2.15833) 4.17 22.2 62.0% feature · violin
Cluster 11 11 XP_001635220.1 (NV2.18156) 1.51 22.0 97.4% feature · violin
Cluster 11 12 XP_032232313.1 (NV2.6608) 2.51 18.4 61.4% feature · violin
Cluster 11 13 XP_048579288.1 (NV2.11592) 1.15 18.2 96.7% feature · violin
Cluster 11 14 NV2.19382 not mapped 1.48 18.0 98.7% feature · violin
Cluster 11 15 XP_001624116.2 (NV2.15387) 1.01 17.4 99.8% feature · violin
Cluster 11 16 NV2.13027 not mapped 1.40 17.0 91.0% feature · violin
Cluster 11 17 XP_032223614.2 (NV2.9935) 1.60 16.9 74.7% feature · violin
Cluster 11 18 XP_001618258.1 (NV2.8109) 0.91 16.7 99.8% feature · violin
Cluster 11 19 XP_001638352.1 (NV2.6253) 0.29 16.6 100.0% feature · violin
Cluster 11 20 XP_001632423.1 (NV2.14027) 0.95 16.5 100.0% feature · violin
Cluster 11 21 NV2.1311 not mapped 3.19 16.4 48.7% feature · violin
Cluster 11 22 NV2.13030 not mapped 1.70 16.2 95.9% feature · violin
Cluster 11 23 NV2.25931 not mapped 1.57 15.6 98.2% feature · violin
Cluster 11 24 NV2.16946 not mapped 0.55 15.5 100.0% feature · violin
Cluster 11 25 XP_032231166.1 (NV2.24273) 2.60 15.4 50.4% feature · violin
Cluster 11 26 XP_001633979.2 (NV2.16195) 0.48 14.7 100.0% feature · violin
Cluster 11 27 NV2.24072 not mapped 0.58 14.5 100.0% feature · violin
Cluster 11 28 NV2.23020 not mapped 0.97 14.2 96.3% feature · violin
Cluster 11 29 XP_032234505.2 (NV2.7902) 0.92 14.2 100.0% feature · violin
Cluster 11 30 XP_032218050.1 (NV2.23418) 1.94 14.2 47.6% feature · violin
Cluster 11 31 NV2.22242 not mapped 0.74 14.0 99.8% feature · violin
Cluster 11 32 XP_001628790.1 (NV2.4249) 0.36 13.9 100.0% feature · violin
Cluster 11 33 NV2.16774 not mapped 0.47 13.8 100.0% feature · violin
Cluster 11 34 NV2.15061 not mapped 0.68 13.8 99.6% feature · violin
Cluster 11 35 XP_001625005.2 (NV2.13837) 1.02 13.7 96.1% feature · violin
Cluster 11 36 NV2.23723 not mapped 0.49 13.7 100.0% feature · violin
Cluster 11 37 XP_032231087.2 (NV2.2587) 0.85 13.5 100.0% feature · violin
Cluster 11 38 XP_001640005.1 (NV2.6963) 0.93 13.5 92.3% feature · violin
Cluster 11 39 XP_032241030.1 (NV2.21894) 0.70 13.2 100.0% feature · violin
Cluster 11 40 XP_048586979.1 (NV2.24609) 0.70 13.1 100.0% feature · violin
Cluster 11 41 XP_001628593.2 (NV2.25721) 0.79 12.9 98.5% feature · violin
Cluster 11 42 XP_048583932.1 (NV2.23537) 0.81 12.9 98.5% feature · violin
Cluster 11 43 XP_032236237.2 (NV2.1695) 0.60 12.8 99.8% feature · violin
Cluster 11 44 XP_032236785.2 (NV2.17187) 0.38 12.7 100.0% feature · violin
Cluster 11 45 XP_048580525.1 (NV2.15242) 0.74 12.6 99.8% feature · violin
Cluster 11 46 XP_001619730.1 (NV2.8110) 0.80 12.5 100.0% feature · violin
Cluster 11 47 NV2.14483 not mapped 0.93 12.5 83.9% feature · violin
Cluster 11 48 XP_032236975.2 (NV2.7472) 0.76 12.5 99.6% feature · violin
Cluster 11 49 XP_001623931.2 (NV2.4757) 0.85 12.4 100.0% feature · violin
Cluster 11 50 NV2.24347 not mapped 0.66 12.3 98.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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