Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 141389 Cluster 61086 Cluster 1815 Cluster 8793 Cluster 12785 Cluster 2721 Cluster 16559 Cluster 7549 Cluster 11542 Cluster 4530 Cluster 9430 Cluster 0376 Cluster 3355 Cluster 5313 Cluster 15238 Cluster 10182 Cluster 1348
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.6961 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 XP_032237865.2 (NV2.2727) 4.48 56.5 99.9% feature · violin
Cluster 14 2 XP_032241044.1 (NV2.21886) 3.23 55.4 100.0% feature · violin
Cluster 14 3 XP_048589872.1 (NV2.10942) 2.53 55.0 100.0% feature · violin
Cluster 14 4 NV2.8570 not mapped 1.33 54.9 100.0% feature · violin
Cluster 14 5 XP_032239608.1 (NV2.23250) 5.49 54.8 100.0% feature · violin
Cluster 14 6 NV2.17986 not mapped 2.71 54.6 100.0% feature · violin
Cluster 14 7 NV2.19908 not mapped 3.20 54.5 99.9% feature · violin
Cluster 14 8 NV2.4071 not mapped 3.64 54.4 99.4% feature · violin
Cluster 14 9 XP_001633323.2 (NV2.20205) 5.10 54.3 100.0% feature · violin
Cluster 14 10 XP_001637756.2 (NV2.24122) 3.60 54.3 99.6% feature · violin
Cluster 14 11 XP_048576278.1 (NV2.7884) 2.63 54.3 99.9% feature · violin
Cluster 14 12 XP_032242814.2 (NV2.13162) 3.86 53.8 99.5% feature · violin
Cluster 14 13 XP_001629343.2 (NV2.12640) 1.71 53.7 100.0% feature · violin
Cluster 14 14 XP_001640083.2 (NV2.6961) 2.28 53.7 100.0% feature · violin
Cluster 14 15 XP_001630598.2 (NV2.7700) 5.80 53.6 99.9% feature · violin
Cluster 14 16 XP_001636593.2 (NV2.16121) 6.15 53.3 99.8% feature · violin
Cluster 14 17 XP_048586062.1 (NV2.20054) 5.83 53.1 98.2% feature · violin
Cluster 14 18 XP_001641799.2 (NV2.3298) 4.53 53.0 98.4% feature · violin
Cluster 14 19 XP_001629744.1 (NV2.17242) 3.64 53.0 99.6% feature · violin
Cluster 14 20 XP_001628339.1 (NV2.6591) 4.20 53.0 100.0% feature · violin
Cluster 14 21 NV2.4122 not mapped 3.80 52.9 99.8% feature · violin
Cluster 14 22 XP_001630583.1 (NV2.7661) 1.37 52.9 100.0% feature · violin
Cluster 14 23 XP_032220199.2 (NV2.5277) 5.12 52.8 98.6% feature · violin
Cluster 14 24 NV2.13196 not mapped 2.07 52.6 100.0% feature · violin
Cluster 14 25 XP_032228005.1 (NV2.7614) 2.82 52.6 99.4% feature · violin
Cluster 14 26 XP_001640903.2 (NV2.1654) 5.66 52.6 99.9% feature · violin
Cluster 14 27 XP_032236866.1 (NV2.22508) 4.50 52.5 99.5% feature · violin
Cluster 14 28 NV2.13876 not mapped 4.20 52.5 95.7% feature · violin
Cluster 14 29 XP_001631308.3 (NV2.4742) 3.73 52.4 99.1% feature · violin
Cluster 14 30 XP_001631593.2 (NV2.23891) 2.52 52.4 99.8% feature · violin
Cluster 14 31 NV2.21015 not mapped 5.28 52.4 97.0% feature · violin
Cluster 14 32 XP_032229634.2 (NV2.22761) 5.70 52.2 95.1% feature · violin
Cluster 14 33 NV2.3190 not mapped 2.47 52.1 100.0% feature · violin
Cluster 14 34 XP_032222519.2 (NV2.17865) 4.42 52.0 99.7% feature · violin
Cluster 14 35 XP_032239118.1 (NV2.16176) 3.44 51.9 96.5% feature · violin
Cluster 14 36 NV2.23463 not mapped 2.91 51.7 99.9% feature · violin
Cluster 14 37 XP_001636306.2 (NV2.25421) 4.91 51.6 94.5% feature · violin
Cluster 14 38 XP_048587643.1 (NV2.24578) 3.45 51.6 98.4% feature · violin
Cluster 14 39 XP_001637641.2 (NV2.23310) 2.24 51.6 99.9% feature · violin
Cluster 14 40 XP_032237477.1 (NV2.3891) 5.50 51.6 99.9% feature · violin
Cluster 14 41 NV2.21016 not mapped 5.01 51.6 94.5% feature · violin
Cluster 14 42 XP_001640689.1 (NV2.20404) 3.38 51.6 100.0% feature · violin
Cluster 14 43 XP_001628775.3 (NV2.4207) 5.21 51.3 94.5% feature · violin
Cluster 14 44 XP_048578159.1 (NV2.8959) 2.86 51.3 99.7% feature · violin
Cluster 14 45 XP_001637258.3 (NV2.22480) 2.97 51.1 98.3% feature · violin
Cluster 14 46 XP_032235114.2 (NV2.7667) 3.56 51.0 96.8% feature · violin
Cluster 14 47 XP_001640776.3 (NV2.18882) 2.85 50.9 97.4% feature · violin
Cluster 14 48 XP_001641534.3 (NV2.12087) 4.96 50.8 99.3% feature · violin
Cluster 14 49 XP_032221193.2 (NV2.1041) 4.07 50.6 93.2% feature · violin
Cluster 14 50 NV2.22692 not mapped 2.85 50.4 99.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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