Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 141389 Cluster 61086 Cluster 1815 Cluster 8793 Cluster 12785 Cluster 2721 Cluster 16559 Cluster 7549 Cluster 11542 Cluster 4530 Cluster 9430 Cluster 0376 Cluster 3355 Cluster 5313 Cluster 15238 Cluster 10182 Cluster 1348
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.9628 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 1 1 NV2.20988 3.01 39.3 100.0% feature · violin
Cluster 1 2 NV2.25681 2.63 37.5 99.9% feature · violin
Cluster 1 3 NV2.2881 1.46 37.5 100.0% feature · violin
Cluster 1 4 NV2.745 1.17 35.9 100.0% feature · violin
Cluster 1 5 NV2.25780 2.36 34.5 96.2% feature · violin
Cluster 1 6 NV2.18050 1.04 33.8 100.0% feature · violin
Cluster 1 7 NV2.3358 3.21 33.3 83.3% feature · violin
Cluster 1 8 NV2.3357 1.70 32.6 100.0% feature · violin
Cluster 1 9 NV2.17293 1.50 31.6 100.0% feature · violin
Cluster 1 10 NV2.241 1.01 30.8 100.0% feature · violin
Cluster 1 11 NV2.2003 0.95 30.5 100.0% feature · violin
Cluster 1 12 NV2.10881 1.87 30.4 97.7% feature · violin
Cluster 1 13 NV2.5344 1.13 30.2 100.0% feature · violin
Cluster 1 14 NV2.21893 0.95 29.8 100.0% feature · violin
Cluster 1 15 NV2.24179 1.70 29.8 99.6% feature · violin
Cluster 1 16 NV2.8872 1.42 29.2 99.5% feature · violin
Cluster 1 17 NV2.13423 1.58 29.1 99.9% feature · violin
Cluster 1 18 NV2.19579 1.57 29.1 99.3% feature · violin
Cluster 1 19 NV2.19828 0.94 28.7 100.0% feature · violin
Cluster 1 20 NV2.8669 1.38 28.4 99.8% feature · violin
Cluster 1 21 NV2.2471 1.59 27.8 94.7% feature · violin
Cluster 1 22 NV2.15016 1.58 27.8 98.2% feature · violin
Cluster 1 23 NV2.8159 1.21 27.7 99.5% feature · violin
Cluster 1 24 NV2.9808 1.28 27.7 99.5% feature · violin
Cluster 1 25 NV2.25355 1.43 27.7 99.8% feature · violin
Cluster 1 26 NV2.12310 1.23 27.3 99.9% feature · violin
Cluster 1 27 NV2.22694 1.16 27.3 99.8% feature · violin
Cluster 1 28 NV2.11561 0.89 27.2 100.0% feature · violin
Cluster 1 29 NV2.10277 1.02 27.2 99.9% feature · violin
Cluster 1 30 NV2.18941 0.99 27.0 100.0% feature · violin
Cluster 1 31 NV2.21595 1.12 26.9 99.9% feature · violin
Cluster 1 32 NV2.25650 1.31 26.9 97.8% feature · violin
Cluster 1 33 NV2.12141 1.24 26.7 100.0% feature · violin
Cluster 1 34 NV2.1852 0.72 26.7 100.0% feature · violin
Cluster 1 35 NV2.8673 1.13 26.4 99.6% feature · violin
Cluster 1 36 NV2.4228 0.91 26.4 100.0% feature · violin
Cluster 1 37 NV2.15977 0.86 26.4 100.0% feature · violin
Cluster 1 38 NV2.2637 1.46 26.3 98.3% feature · violin
Cluster 1 39 NV2.15895 1.34 26.2 98.7% feature · violin
Cluster 1 40 NV2.2655 1.10 26.1 100.0% feature · violin
Cluster 1 41 NV2.9628 1.54 26.0 92.8% feature · violin
Cluster 1 42 NV2.18685 1.12 25.9 100.0% feature · violin
Cluster 1 43 NV2.5153 1.50 25.9 95.0% feature · violin
Cluster 1 44 NV2.19271 1.23 25.9 99.4% feature · violin
Cluster 1 45 NV2.24082 1.04 25.7 100.0% feature · violin
Cluster 1 46 NV2.17682 1.11 25.7 98.9% feature · violin
Cluster 1 47 NV2.10627 1.23 25.5 99.6% feature · violin
Cluster 1 48 NV2.21299 1.11 25.5 99.9% feature · violin
Cluster 1 49 NV2.15776 1.26 25.1 98.8% feature · violin
Cluster 1 50 NV2.20715 0.77 25.1 99.9% feature · violin
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