Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g001445000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 NV2g005216000.1 5.82 26.5 88.0% feature · violin
Cluster 11 2 NV2g007089000.1 4.33 25.7 84.5% feature · violin
Cluster 11 3 NV2g001200000.1 4.63 24.6 81.2% feature · violin
Cluster 11 4 NV2g001445000.1 6.78 22.9 69.9% feature · violin
Cluster 11 5 NV2g010312000.1 6.43 22.0 65.9% feature · violin
Cluster 11 6 NV2g001448000.1 7.17 20.9 61.2% feature · violin
Cluster 11 7 NV2g014774000.1 4.90 20.0 62.4% feature · violin
Cluster 11 8 NV2g004529000.1 4.61 19.5 60.9% feature · violin
Cluster 11 9 NV2g021230000.1 4.78 18.5 56.7% feature · violin
Cluster 11 10 NV2g001202000.1 5.20 18.4 57.2% feature · violin
Cluster 11 11 NV2g009665000.1 5.09 17.7 53.4% feature · violin
Cluster 11 12 NV2g003558000.1 6.27 17.1 50.6% feature · violin
Cluster 11 13 NV2g003318000.1 5.79 17.0 51.1% feature · violin
Cluster 11 14 NV2g016897000.1 3.03 16.8 61.9% feature · violin
Cluster 11 15 NV2g012023000.1 6.98 16.7 48.2% feature · violin
Cluster 11 16 NV2g019965000.1 3.59 16.7 56.5% feature · violin
Cluster 11 17 NV2g017740000.1 3.07 16.4 59.8% feature · violin
Cluster 11 18 NV2g012705000.1 4.66 16.2 50.1% feature · violin
Cluster 11 19 NV2g003475000.1 5.91 16.2 47.5% feature · violin
Cluster 11 20 NV2g003319000.1 5.68 16.1 48.7% feature · violin
Cluster 11 21 NV2g012706000.1 4.30 15.9 50.6% feature · violin
Cluster 11 22 NV2g017939000.1 4.01 15.8 51.3% feature · violin
Cluster 11 23 NV2g020761000.1 1.12 15.5 96.9% feature · violin
Cluster 11 24 NV2g012676000.1 6.58 15.2 44.0% feature · violin
Cluster 11 25 NV2g008512000.1 3.52 15.2 51.8% feature · violin
Cluster 11 26 NV2g023192000.1 3.99 15.1 48.7% feature · violin
Cluster 11 27 NV2g004017000.1 4.37 14.9 47.5% feature · violin
Cluster 11 28 NV2g008437000.1 4.44 14.3 44.7% feature · violin
Cluster 11 29 NV2g016964000.1 1.91 14.2 71.5% feature · violin
Cluster 11 30 NV2g012348000.1 4.72 14.2 43.5% feature · violin
Cluster 11 31 NV2g013863000.1 1.85 13.9 77.6% feature · violin
Cluster 11 32 NV2g023233000.1 2.44 13.4 55.1% feature · violin
Cluster 11 33 NV2g007700000.1 1.33 13.2 84.9% feature · violin
Cluster 11 34 NV2g012488000.1 5.46 13.1 38.8% feature · violin
Cluster 11 35 NV2g010193000.1 5.44 12.6 37.2% feature · violin
Cluster 11 36 NV2g009228000.1 6.34 12.4 36.0% feature · violin
Cluster 11 37 NV2g012028000.1 1.04 12.2 93.4% feature · violin
Cluster 11 38 NV2g003243000.1 1.53 12.1 71.1% feature · violin
Cluster 11 39 NV2g000363000.1 2.11 12.1 49.6% feature · violin
Cluster 11 40 NV2g005089000.1 2.18 12.0 51.8% feature · violin
Cluster 11 41 NV2g015163000.1 4.44 12.0 36.5% feature · violin
Cluster 11 42 NV2g000252000.1 3.50 11.7 38.6% feature · violin
Cluster 11 43 NV2g019851000.1 3.97 11.5 36.2% feature · violin
Cluster 11 44 NV2g015161000.1 2.17 11.5 48.7% feature · violin
Cluster 11 45 NV2g003783000.1 1.86 11.4 55.1% feature · violin
Cluster 11 46 NV2g020373000.1 1.68 11.3 58.1% feature · violin
Cluster 11 47 NV2g013751000.1 1.86 11.2 53.6% feature · violin
Cluster 11 48 NV2g022415000.1 3.21 11.1 37.2% feature · violin
Cluster 11 49 NV2g025322000.1 4.27 11.1 33.9% feature · violin
Cluster 11 50 NV2g012154000.1 0.96 11.0 84.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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