Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g003802000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 20 1 NV2g021411000.1 4.74 15.1 81.1% feature · violin
Cluster 20 2 NV2g013423000.1 4.81 15.0 79.7% feature · violin
Cluster 20 3 NV2g021409000.1 4.06 14.3 78.4% feature · violin
Cluster 20 4 NV2g013030000.1 1.71 14.2 100.0% feature · violin
Cluster 20 5 NV2g013027000.1 2.73 14.1 93.2% feature · violin
Cluster 20 6 NV2g012174000.1 6.19 13.6 66.9% feature · violin
Cluster 20 7 NV2g023124000.1 6.78 12.7 62.2% feature · violin
Cluster 20 8 NV2g019306000.1 2.05 12.0 90.5% feature · violin
Cluster 20 9 NV2g015818000.1 4.28 11.4 60.8% feature · violin
Cluster 20 10 NV2g012183000.1 4.41 11.1 58.8% feature · violin
Cluster 20 11 NV2g012085000.1 7.11 11.0 53.4% feature · violin
Cluster 20 12 NV2g024576000.1 1.49 10.8 98.0% feature · violin
Cluster 20 13 NV2g020910000.1 2.85 10.8 68.9% feature · violin
Cluster 20 14 NV2g025931000.1 1.76 10.7 99.3% feature · violin
Cluster 20 15 NV2g012084000.1 5.42 10.5 52.7% feature · violin
Cluster 20 16 NV2g015870000.1 4.29 10.4 54.7% feature · violin
Cluster 20 17 NV2g004483000.1 4.58 10.4 54.7% feature · violin
Cluster 20 18 NV2g023125000.1 5.25 10.3 52.0% feature · violin
Cluster 20 19 NV2g003298000.1 2.31 10.2 76.4% feature · violin
Cluster 20 20 NV2g004619000.1 2.63 10.1 66.9% feature · violin
Cluster 20 21 NV2g003089000.1 3.79 9.9 54.7% feature · violin
Cluster 20 22 NV2g017119000.1 4.46 9.6 50.0% feature · violin
Cluster 20 23 NV2g020404000.1 1.05 9.6 99.3% feature · violin
Cluster 20 24 NV2g004207000.1 3.14 9.6 57.4% feature · violin
Cluster 20 25 NV2g024229000.1 6.65 9.5 46.6% feature · violin
Cluster 20 26 NV2g006264000.1 2.03 9.5 89.2% feature · violin
Cluster 20 27 NV2g005166000.1 2.33 9.4 68.9% feature · violin
Cluster 20 28 NV2g023230000.1 2.59 9.4 69.6% feature · violin
Cluster 20 29 NV2g012384000.1 2.81 9.3 60.1% feature · violin
Cluster 20 30 NV2g011772000.1 4.73 9.3 48.0% feature · violin
Cluster 20 31 NV2g004715000.1 3.94 9.2 50.0% feature · violin
Cluster 20 32 NV2g021747000.1 4.49 9.2 48.0% feature · violin
Cluster 20 33 NV2g024578000.1 2.23 9.1 68.2% feature · violin
Cluster 20 34 NV2g015097000.1 2.23 8.9 74.3% feature · violin
Cluster 20 35 NV2g012373000.1 5.96 8.9 43.9% feature · violin
Cluster 20 36 NV2g010875000.1 4.69 8.8 45.3% feature · violin
Cluster 20 37 NV2g023876000.1 5.87 8.7 43.2% feature · violin
Cluster 20 38 NV2g022099000.1 3.34 8.4 50.0% feature · violin
Cluster 20 39 NV2g023123000.1 5.63 8.4 41.9% feature · violin
Cluster 20 40 NV2g003706000.1 3.87 8.2 44.6% feature · violin
Cluster 20 41 NV2g016484000.1 2.70 8.2 55.4% feature · violin
Cluster 20 42 NV2g025910000.1 1.83 8.1 69.6% feature · violin
Cluster 20 43 NV2g024579000.1 5.21 8.1 40.5% feature · violin
Cluster 20 44 NV2g001169000.1 1.71 8.0 71.6% feature · violin
Cluster 20 45 NV2g006416000.1 2.43 7.8 54.1% feature · violin
Cluster 20 46 NV2g018471000.1 2.13 7.6 57.4% feature · violin
Cluster 20 47 NV2g002415000.1 1.35 7.6 80.4% feature · violin
Cluster 20 48 NV2g003802000.1 2.20 7.6 56.1% feature · violin
Cluster 20 49 NV2g002926000.1 3.36 7.6 42.6% feature · violin
Cluster 20 50 NV2g015819000.1 6.01 7.5 37.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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