Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g008484000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 26 1 NV2g016864000.1 3.46 11.0 100.0% feature · violin
Cluster 26 2 NV2g011544000.1 4.31 9.2 81.5% feature · violin
Cluster 26 3 NV2g015097000.1 3.41 9.2 96.3% feature · violin
Cluster 26 4 NV2g008119000.1 3.57 9.0 85.2% feature · violin
Cluster 26 5 NV2g022443000.1 3.07 8.9 96.3% feature · violin
Cluster 26 6 NV2g006264000.1 2.96 8.7 100.0% feature · violin
Cluster 26 7 NV2g006375000.1 4.45 8.6 74.1% feature · violin
Cluster 26 8 NV2g011803000.1 3.21 8.4 87.0% feature · violin
Cluster 26 9 NV2g023230000.1 2.88 8.2 98.1% feature · violin
Cluster 26 10 NV2g005277000.1 2.41 8.1 96.3% feature · violin
Cluster 26 11 NV2g006591000.1 2.43 8.0 96.3% feature · violin
Cluster 26 12 NV2g024723000.1 2.05 8.0 98.1% feature · violin
Cluster 26 13 NV2g001062000.1 1.32 7.9 100.0% feature · violin
Cluster 26 14 NV2g008285000.1 2.28 7.9 100.0% feature · violin
Cluster 26 15 NV2g021894000.1 1.89 7.8 100.0% feature · violin
Cluster 26 16 NV2g009987000.1 3.76 7.7 68.5% feature · violin
Cluster 26 17 NV2g012726000.1 2.68 7.7 96.3% feature · violin
Cluster 26 18 NV2g000805000.1 2.39 7.7 88.9% feature · violin
Cluster 26 19 NV2g020247000.1 2.36 7.7 98.1% feature · violin
Cluster 26 20 NV2g005238000.1 2.59 7.6 100.0% feature · violin
Cluster 26 21 NV2g009093000.1 3.05 7.6 75.9% feature · violin
Cluster 26 22 NV2g022761000.1 1.56 7.6 100.0% feature · violin
Cluster 26 23 NV2g007354000.1 1.88 7.6 100.0% feature · violin
Cluster 26 24 NV2g024170000.1 2.28 7.5 90.7% feature · violin
Cluster 26 25 NV2g003257000.1 2.59 7.4 81.5% feature · violin
Cluster 26 26 NV2g016121000.1 1.37 7.1 100.0% feature · violin
Cluster 26 27 NV2g007880000.1 2.34 7.1 88.9% feature · violin
Cluster 26 28 NV2g012087000.1 0.88 7.1 100.0% feature · violin
Cluster 26 29 NV2g005973000.1 1.93 7.0 94.4% feature · violin
Cluster 26 30 NV2g022469000.1 2.16 7.0 88.9% feature · violin
Cluster 26 31 NV2g022015000.1 2.06 6.8 88.9% feature · violin
Cluster 26 32 NV2g005524000.1 2.12 6.8 87.0% feature · violin
Cluster 26 33 NV2g024072000.1 2.13 6.7 94.4% feature · violin
Cluster 26 34 NV2g001654000.1 1.92 6.7 100.0% feature · violin
Cluster 26 35 NV2g005968000.1 2.71 6.6 66.7% feature · violin
Cluster 26 36 NV2g004575000.1 1.96 6.6 87.0% feature · violin
Cluster 26 37 NV2g017961000.1 2.14 6.6 92.6% feature · violin
Cluster 26 38 NV2g015516000.1 2.18 6.6 96.3% feature · violin
Cluster 26 39 NV2g009154000.1 2.09 6.5 100.0% feature · violin
Cluster 26 40 NV2g016484000.1 2.31 6.5 75.9% feature · violin
Cluster 26 41 NV2g019682000.1 2.31 6.5 72.2% feature · violin
Cluster 26 42 NV2g020054000.1 1.66 6.4 98.1% feature · violin
Cluster 26 43 NV2g016923000.1 2.19 6.4 75.9% feature · violin
Cluster 26 44 NV2g008484000.1 4.31 6.3 53.7% feature · violin
Cluster 26 45 NV2g019104000.1 1.11 6.3 100.0% feature · violin
Cluster 26 46 NV2g011736000.1 1.79 6.3 98.1% feature · violin
Cluster 26 47 NV2g006253000.1 1.49 6.3 98.1% feature · violin
Cluster 26 48 NV2g001852000.1 1.83 6.2 92.6% feature · violin
Cluster 26 49 NV2g010172000.1 2.45 6.2 66.7% feature · violin
Cluster 26 50 NV2g023463000.1 1.65 6.2 98.1% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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