Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g009880000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 23 1 NV2g011802000.1 9.07 22.3 100.0% feature · violin
Cluster 23 2 NV2g011825000.1 7.51 21.5 98.2% feature · violin
Cluster 23 3 NV2g000363000.1 7.58 21.5 98.2% feature · violin
Cluster 23 4 NV2g011721000.1 7.06 21.3 100.0% feature · violin
Cluster 23 5 NV2g010686000.1 6.80 20.6 100.0% feature · violin
Cluster 23 6 NV2g011821000.1 6.39 20.5 97.0% feature · violin
Cluster 23 7 NV2g009880000.1 8.97 20.1 90.5% feature · violin
Cluster 23 8 NV2g011720000.1 6.20 19.7 93.5% feature · violin
Cluster 23 9 NV2g013382000.1 6.55 19.3 90.5% feature · violin
Cluster 23 10 NV2g010077000.1 6.82 19.3 89.3% feature · violin
Cluster 23 11 NV2g011819000.1 9.29 19.0 85.7% feature · violin
Cluster 23 12 NV2g014012000.1 8.21 19.0 85.7% feature · violin
Cluster 23 13 NV2g017392000.1 5.89 18.7 89.3% feature · violin
Cluster 23 14 NV2g011723000.1 6.07 18.6 89.3% feature · violin
Cluster 23 15 NV2g023668000.1 5.48 18.3 88.7% feature · violin
Cluster 23 16 NV2g005200000.1 5.11 17.7 91.1% feature · violin
Cluster 23 17 NV2g023669000.1 3.20 17.2 91.1% feature · violin
Cluster 23 18 NV2g023423000.1 5.49 17.1 82.1% feature · violin
Cluster 23 19 NV2g024894000.1 9.95 17.0 76.2% feature · violin
Cluster 23 20 NV2g002652000.1 5.06 17.0 83.9% feature · violin
Cluster 23 21 NV2g004511000.1 5.81 16.6 78.6% feature · violin
Cluster 23 22 NV2g006073000.1 5.64 16.0 75.6% feature · violin
Cluster 23 23 NV2g017402000.1 6.60 16.0 73.8% feature · violin
Cluster 23 24 NV2g010282000.1 5.57 15.9 75.0% feature · violin
Cluster 23 25 NV2g018480000.1 4.73 15.5 78.0% feature · violin
Cluster 23 26 NV2g018052000.1 5.52 15.1 72.0% feature · violin
Cluster 23 27 NV2g001851000.1 4.27 15.1 79.2% feature · violin
Cluster 23 28 NV2g017877000.1 4.65 14.9 74.4% feature · violin
Cluster 23 29 NV2g014004000.1 5.81 14.6 68.5% feature · violin
Cluster 23 30 NV2g008284000.1 9.88 14.6 65.5% feature · violin
Cluster 23 31 NV2g013045000.1 4.49 14.5 73.2% feature · violin
Cluster 23 32 NV2g013381000.1 5.45 14.5 68.5% feature · violin
Cluster 23 33 NV2g023597000.1 2.78 14.4 83.3% feature · violin
Cluster 23 34 NV2g001925000.1 4.34 14.2 73.8% feature · violin
Cluster 23 35 NV2g003783000.1 3.58 14.1 77.4% feature · violin
Cluster 23 36 NV2g016606000.1 3.47 13.9 76.2% feature · violin
Cluster 23 37 NV2g001044000.1 4.97 13.9 66.7% feature · violin
Cluster 23 38 NV2g000010000.1 1.75 13.7 91.1% feature · violin
Cluster 23 39 NV2g000975000.1 3.96 13.5 72.6% feature · violin
Cluster 23 40 NV2g006419000.1 1.32 13.3 95.2% feature · violin
Cluster 23 41 NV2g000954000.1 1.57 13.3 91.1% feature · violin
Cluster 23 42 NV2g013986000.1 1.89 13.3 88.1% feature · violin
Cluster 23 43 NV2g001477000.1 9.24 13.2 59.5% feature · violin
Cluster 23 44 NV2g009497000.1 4.85 13.2 64.3% feature · violin
Cluster 23 45 NV2g009503000.1 10.26 13.1 58.9% feature · violin
Cluster 23 46 NV2g005887000.1 0.82 13.0 99.4% feature · violin
Cluster 23 47 NV2g010277000.1 1.82 12.9 88.1% feature · violin
Cluster 23 48 NV2g001047000.1 9.38 12.8 57.7% feature · violin
Cluster 23 49 NV2g021667000.1 5.47 12.8 60.1% feature · violin
Cluster 23 50 NV2g011816000.1 3.59 12.8 75.6% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

TOP