Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g012201000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 NV2g006785000.1 8.30 52.2 96.5% feature · violin
Cluster 19 2 NV2g011564000.1 8.52 51.3 95.4% feature · violin
Cluster 19 3 NV2g003425000.1 8.25 50.5 93.5% feature · violin
Cluster 19 4 NV2g003667000.1 7.59 42.9 79.8% feature · violin
Cluster 19 5 NV2g022820000.1 7.22 42.3 78.6% feature · violin
Cluster 19 6 NV2g021610000.1 7.44 42.1 78.0% feature · violin
Cluster 19 7 NV2g012904000.1 7.34 40.7 76.1% feature · violin
Cluster 19 8 NV2g008609000.1 7.17 40.0 75.8% feature · violin
Cluster 19 9 NV2g010185000.1 4.69 39.3 78.9% feature · violin
Cluster 19 10 NV2g017740000.1 4.99 36.0 71.5% feature · violin
Cluster 19 11 NV2g014988000.1 7.14 34.7 64.3% feature · violin
Cluster 19 12 NV2g017224000.1 4.10 34.4 72.5% feature · violin
Cluster 19 13 NV2g012201000.1 5.30 34.2 66.9% feature · violin
Cluster 19 14 NV2g007104000.1 2.58 33.3 80.9% feature · violin
Cluster 19 15 NV2g000770000.1 6.96 33.2 62.0% feature · violin
Cluster 19 16 NV2g005210000.1 5.57 31.9 61.3% feature · violin
Cluster 19 17 NV2g013885000.1 4.66 31.1 62.7% feature · violin
Cluster 19 18 NV2g012340000.1 4.65 30.4 61.4% feature · violin
Cluster 19 19 NV2g012902000.1 6.82 29.7 55.4% feature · violin
Cluster 19 20 NV2g014898000.1 3.76 29.2 63.9% feature · violin
Cluster 19 21 NV2g011271000.1 4.88 29.0 57.1% feature · violin
Cluster 19 22 NV2g007431000.1 6.28 29.0 54.3% feature · violin
Cluster 19 23 NV2g023899000.1 4.92 28.8 56.9% feature · violin
Cluster 19 24 NV2g014348000.1 3.48 28.3 63.4% feature · violin
Cluster 19 25 NV2g010277000.1 1.57 28.1 84.0% feature · violin
Cluster 19 26 NV2g012903000.1 6.64 28.0 52.4% feature · violin
Cluster 19 27 NV2g004036000.1 3.62 27.8 61.5% feature · violin
Cluster 19 28 NV2g007089000.1 3.41 27.5 62.1% feature · violin
Cluster 19 29 NV2g003190000.1 1.81 26.6 78.6% feature · violin
Cluster 19 30 NV2g018211000.1 3.28 26.3 60.0% feature · violin
Cluster 19 31 NV2g006419000.1 1.06 26.0 94.6% feature · violin
Cluster 19 32 NV2g004108000.1 6.77 26.0 48.2% feature · violin
Cluster 19 33 NV2g024746000.1 6.76 25.7 47.8% feature · violin
Cluster 19 34 NV2g018581000.1 6.49 25.7 47.9% feature · violin
Cluster 19 35 NV2g014902000.1 5.30 25.6 49.3% feature · violin
Cluster 19 36 NV2g017916000.1 3.86 25.4 54.4% feature · violin
Cluster 19 37 NV2g000792000.1 1.90 25.2 71.9% feature · violin
Cluster 19 38 NV2g007046000.1 3.64 25.1 55.6% feature · violin
Cluster 19 39 NV2g008729000.1 2.21 25.0 68.5% feature · violin
Cluster 19 40 NV2g023347000.1 5.09 24.3 47.7% feature · violin
Cluster 19 41 NV2g001227000.1 3.83 24.3 52.5% feature · violin
Cluster 19 42 NV2g008959000.1 1.93 24.3 70.4% feature · violin
Cluster 19 43 NV2g017583000.1 6.72 24.2 45.0% feature · violin
Cluster 19 44 NV2g025450000.1 1.75 24.2 72.3% feature · violin
Cluster 19 45 NV2g009784000.1 1.64 24.1 73.9% feature · violin
Cluster 19 46 NV2g013531000.1 1.90 23.7 69.3% feature · violin
Cluster 19 47 NV2g005209000.1 5.38 23.6 45.3% feature · violin
Cluster 19 48 NV2g020814000.1 4.17 23.5 48.6% feature · violin
Cluster 19 49 NV2g024310000.1 2.70 23.5 59.4% feature · violin
Cluster 19 50 NV2g017674000.1 6.85 23.3 43.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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