Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g014384000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 NV2g016827000.1 7.64 18.3 92.1% feature · violin
Cluster 13 2 NV2g021230000.1 7.73 18.0 90.6% feature · violin
Cluster 13 3 NV2g018400000.1 6.88 15.1 76.3% feature · violin
Cluster 13 4 NV2g012348000.1 6.79 14.8 74.8% feature · violin
Cluster 13 5 NV2g016572000.1 8.17 14.6 72.7% feature · violin
Cluster 13 6 NV2g001200000.1 4.55 14.2 82.0% feature · violin
Cluster 13 7 NV2g003594000.1 9.26 13.8 68.3% feature · violin
Cluster 13 8 NV2g017339000.1 7.76 13.7 68.3% feature · violin
Cluster 13 9 NV2g022443000.1 3.70 13.1 80.6% feature · violin
Cluster 13 10 NV2g017740000.1 4.04 12.6 73.4% feature · violin
Cluster 13 11 NV2g003101000.1 5.60 12.6 65.5% feature · violin
Cluster 13 12 NV2g007089000.1 3.81 12.6 74.8% feature · violin
Cluster 13 13 NV2g019965000.1 3.92 11.2 64.0% feature · violin
Cluster 13 14 NV2g012488000.1 6.00 10.7 54.7% feature · violin
Cluster 13 15 NV2g003475000.1 5.57 10.1 51.8% feature · violin
Cluster 13 16 NV2g017242000.1 2.17 9.6 71.2% feature · violin
Cluster 13 17 NV2g000954000.1 1.40 9.5 92.8% feature · violin
Cluster 13 18 NV2g016897000.1 3.06 9.4 59.7% feature · violin
Cluster 13 19 NV2g001953000.1 5.98 9.3 47.5% feature · violin
Cluster 13 20 NV2g010312000.1 4.15 9.2 51.1% feature · violin
Cluster 13 21 NV2g007716000.1 1.66 9.1 81.3% feature · violin
Cluster 13 22 NV2g003243000.1 1.91 9.0 74.1% feature · violin
Cluster 13 23 NV2g024797000.1 2.01 8.9 80.6% feature · violin
Cluster 13 24 NV2g018173000.1 1.83 8.7 72.7% feature · violin
Cluster 13 25 NV2g002295000.1 6.46 8.7 43.9% feature · violin
Cluster 13 26 NV2g021678000.1 6.77 8.7 43.9% feature · violin
Cluster 13 27 NV2g003699000.1 3.30 8.3 50.4% feature · violin
Cluster 13 28 NV2g006019000.1 4.56 8.1 43.2% feature · violin
Cluster 13 29 NV2g016490000.1 2.18 8.0 61.2% feature · violin
Cluster 13 30 NV2g020189000.1 5.86 7.9 40.3% feature · violin
Cluster 13 31 NV2g014384000.1 6.71 7.8 38.8% feature · violin
Cluster 13 32 NV2g001202000.1 3.93 7.7 44.6% feature · violin
Cluster 13 33 NV2g008015000.1 3.89 7.6 43.2% feature · violin
Cluster 13 34 NV2g023669000.1 1.46 7.5 79.1% feature · violin
Cluster 13 35 NV2g008512000.1 3.10 7.5 46.0% feature · violin
Cluster 13 36 NV2g016964000.1 1.89 7.5 65.5% feature · violin
Cluster 13 37 NV2g015925000.1 5.95 7.4 38.1% feature · violin
Cluster 13 38 NV2g016381000.1 3.89 7.3 40.3% feature · violin
Cluster 13 39 NV2g013578000.1 2.54 7.3 49.6% feature · violin
Cluster 13 40 NV2g021718000.1 3.13 7.3 43.9% feature · violin
Cluster 13 41 NV2g004529000.1 3.11 7.2 43.2% feature · violin
Cluster 13 42 NV2g021719000.1 2.02 7.0 55.4% feature · violin
Cluster 13 43 NV2g011310000.1 4.51 7.0 37.4% feature · violin
Cluster 13 44 NV2g021659000.1 7.84 7.0 34.5% feature · violin
Cluster 13 45 NV2g007700000.1 1.25 6.9 79.1% feature · violin
Cluster 13 46 NV2g003704000.1 5.96 6.8 34.5% feature · violin
Cluster 13 47 NV2g001399000.1 5.23 6.8 35.3% feature · violin
Cluster 13 48 NV2g025931000.1 0.96 6.7 100.0% feature · violin
Cluster 13 49 NV2g000625000.1 5.17 6.6 34.5% feature · violin
Cluster 13 50 NV2g001052000.1 1.69 6.5 59.0% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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