Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g017520000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 NV2g006264000.1 5.11 64.0 98.5% feature · violin
Cluster 12 2 NV2g023230000.1 5.32 59.9 93.7% feature · violin
Cluster 12 3 NV2g015097000.1 4.77 57.7 93.2% feature · violin
Cluster 12 4 NV2g016484000.1 5.52 55.7 87.1% feature · violin
Cluster 12 5 NV2g005353000.1 4.55 52.2 84.4% feature · violin
Cluster 12 6 NV2g011803000.1 5.28 51.6 80.8% feature · violin
Cluster 12 7 NV2g021411000.1 4.93 48.9 78.8% feature · violin
Cluster 12 8 NV2g010172000.1 5.33 48.5 75.6% feature · violin
Cluster 12 9 NV2g007911000.1 4.96 47.9 76.2% feature · violin
Cluster 12 10 NV2g003372000.1 5.10 47.1 74.0% feature · violin
Cluster 12 11 NV2g009093000.1 5.37 46.4 72.0% feature · violin
Cluster 12 12 NV2g002881000.1 2.12 45.2 95.0% feature · violin
Cluster 12 13 NV2g013257000.1 3.24 45.0 81.9% feature · violin
Cluster 12 14 NV2g019682000.1 4.61 43.8 71.1% feature · violin
Cluster 12 15 NV2g013423000.1 4.32 42.1 69.6% feature · violin
Cluster 12 16 NV2g013117000.1 4.65 39.5 62.9% feature · violin
Cluster 12 17 NV2g004207000.1 3.76 39.4 67.0% feature · violin
Cluster 12 18 NV2g024984000.1 4.80 38.8 61.2% feature · violin
Cluster 12 19 NV2g011113000.1 5.06 38.2 59.2% feature · violin
Cluster 12 20 NV2g025182000.1 5.19 37.8 58.3% feature · violin
Cluster 12 21 NV2g008037000.1 3.13 37.5 69.6% feature · violin
Cluster 12 22 NV2g018635000.1 4.20 37.5 60.9% feature · violin
Cluster 12 23 NV2g003734000.1 4.81 37.1 58.3% feature · violin
Cluster 12 24 NV2g023229000.1 4.87 37.0 57.6% feature · violin
Cluster 12 25 NV2g005258000.1 3.69 36.5 61.6% feature · violin
Cluster 12 26 NV2g015882000.1 4.16 36.2 58.9% feature · violin
Cluster 12 27 NV2g020510000.1 3.70 35.9 61.0% feature · violin
Cluster 12 28 NV2g016600000.1 4.08 35.8 58.3% feature · violin
Cluster 12 29 NV2g019581000.1 3.59 35.4 60.3% feature · violin
Cluster 12 30 NV2g003089000.1 4.17 35.4 57.1% feature · violin
Cluster 12 31 NV2g002926000.1 4.81 34.6 53.8% feature · violin
Cluster 12 32 NV2g017964000.1 4.34 34.5 55.1% feature · violin
Cluster 12 33 NV2g015818000.1 4.32 34.0 54.5% feature · violin
Cluster 12 34 NV2g014143000.1 4.04 33.9 55.4% feature · violin
Cluster 12 35 NV2g002433000.1 4.88 33.8 52.4% feature · violin
Cluster 12 36 NV2g016205000.1 4.80 33.7 53.2% feature · violin
Cluster 12 37 NV2g012793000.1 4.30 33.3 52.8% feature · violin
Cluster 12 38 NV2g000530000.1 4.93 33.2 51.3% feature · violin
Cluster 12 39 NV2g021203000.1 3.52 32.7 55.6% feature · violin
Cluster 12 40 NV2g012183000.1 4.26 32.6 51.9% feature · violin
Cluster 12 41 NV2g007661000.1 1.34 32.4 98.6% feature · violin
Cluster 12 42 NV2g010728000.1 4.25 32.4 51.3% feature · violin
Cluster 12 43 NV2g017520000.1 4.69 32.0 49.9% feature · violin
Cluster 12 44 NV2g000101000.1 2.61 32.0 65.3% feature · violin
Cluster 12 45 NV2g003632000.1 4.69 31.9 49.6% feature · violin
Cluster 12 46 NV2g002010000.1 3.84 31.9 52.4% feature · violin
Cluster 12 47 NV2g025349000.1 3.14 31.9 57.0% feature · violin
Cluster 12 48 NV2g025475000.1 4.51 31.8 49.9% feature · violin
Cluster 12 49 NV2g002722000.1 3.19 31.3 55.4% feature · violin
Cluster 12 50 NV2g021404000.1 2.97 31.2 57.1% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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