Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g019682000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 NV2g010312000.1 5.83 7.1 100.0% feature · violin
Cluster 15 2 NV2g017939000.1 5.68 7.1 100.0% feature · violin
Cluster 15 3 NV2g005216000.1 6.23 7.0 100.0% feature · violin
Cluster 15 4 NV2g019682000.1 4.76 6.7 100.0% feature · violin
Cluster 15 5 NV2g023230000.1 4.83 6.7 100.0% feature · violin
Cluster 15 6 NV2g006264000.1 4.58 6.6 100.0% feature · violin
Cluster 15 7 NV2g015097000.1 4.48 6.6 100.0% feature · violin
Cluster 15 8 NV2g011113000.1 4.80 6.5 94.7% feature · violin
Cluster 15 9 NV2g005353000.1 4.23 6.4 100.0% feature · violin
Cluster 15 10 NV2g003319000.1 5.18 6.3 89.5% feature · violin
Cluster 15 11 NV2g004513000.1 9.08 6.3 84.2% feature · violin
Cluster 15 12 NV2g020510000.1 4.25 6.3 94.7% feature · violin
Cluster 15 13 NV2g011803000.1 4.41 6.1 94.7% feature · violin
Cluster 15 14 NV2g003558000.1 5.25 6.0 84.2% feature · violin
Cluster 15 15 NV2g009093000.1 4.47 5.9 89.5% feature · violin
Cluster 15 16 NV2g013117000.1 4.25 5.9 89.5% feature · violin
Cluster 15 17 NV2g001445000.1 4.11 5.9 89.5% feature · violin
Cluster 15 18 NV2g013257000.1 3.17 5.7 100.0% feature · violin
Cluster 15 19 NV2g002881000.1 2.30 5.7 100.0% feature · violin
Cluster 15 20 NV2g006260000.1 3.79 5.7 89.5% feature · violin
Cluster 15 21 NV2g003734000.1 4.20 5.6 84.2% feature · violin
Cluster 15 22 NV2g009318000.1 3.30 5.6 89.5% feature · violin
Cluster 15 23 NV2g020888000.1 6.10 5.4 73.7% feature · violin
Cluster 15 24 NV2g004017000.1 4.29 5.4 78.9% feature · violin
Cluster 15 25 NV2g015882000.1 3.71 5.4 84.2% feature · violin
Cluster 15 26 NV2g010172000.1 3.93 5.3 84.2% feature · violin
Cluster 15 27 NV2g023229000.1 4.05 5.3 78.9% feature · violin
Cluster 15 28 NV2g007107000.1 1.18 5.2 100.0% feature · violin
Cluster 15 29 NV2g008519000.1 2.58 5.2 94.7% feature · violin
Cluster 15 30 NV2g003097000.1 1.19 5.1 100.0% feature · violin
Cluster 15 31 NV2g012061000.1 3.55 5.1 78.9% feature · violin
Cluster 15 32 NV2g016484000.1 3.31 5.1 89.5% feature · violin
Cluster 15 33 NV2g003372000.1 3.41 5.1 84.2% feature · violin
Cluster 15 34 NV2g014602000.1 3.99 5.0 73.7% feature · violin
Cluster 15 35 NV2g011330000.1 4.43 4.8 68.4% feature · violin
Cluster 15 36 NV2g018467000.1 1.21 4.8 100.0% feature · violin
Cluster 15 37 NV2g025182000.1 3.40 4.7 73.7% feature · violin
Cluster 15 38 NV2g005887000.1 0.79 4.7 100.0% feature · violin
Cluster 15 39 NV2g003196000.1 1.30 4.6 100.0% feature · violin
Cluster 15 40 NV2g015005000.1 2.23 4.6 94.7% feature · violin
Cluster 15 41 NV2g025349000.1 3.17 4.5 73.7% feature · violin
Cluster 15 42 NV2g007911000.1 3.02 4.5 78.9% feature · violin
Cluster 15 43 NV2g012793000.1 3.70 4.5 68.4% feature · violin
Cluster 15 44 NV2g011262000.1 3.53 4.5 68.4% feature · violin
Cluster 15 45 NV2g015684000.1 1.35 4.5 100.0% feature · violin
Cluster 15 46 NV2g023197000.1 7.75 4.3 57.9% feature · violin
Cluster 15 47 NV2g012116000.1 2.00 4.3 94.7% feature · violin
Cluster 15 48 NV2g004207000.1 2.93 4.3 73.7% feature · violin
Cluster 15 49 NV2g015226000.1 1.16 4.3 100.0% feature · violin
Cluster 15 50 NV2g021203000.1 3.24 4.3 68.4% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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