Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 12453 Cluster 01912 Cluster 121726 Cluster 61096 Cluster 191074 Cluster 81052 Cluster 7919 Cluster 2848 Cluster 10746 Cluster 4745 Cluster 17645 Cluster 21521 Cluster 16518 Cluster 11425 Cluster 18378 Cluster 14349 Cluster 5169 Cluster 23168 Cluster 3162 Cluster 20148 Cluster 24148 Cluster 13139 Cluster 2571 Cluster 969 Cluster 2654 Cluster 2236 Cluster 1519
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2g020947000.1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 NV2g013863000.1 3.68 30.9 94.2% feature · violin
Cluster 16 2 NV2g016402000.1 3.29 23.1 75.1% feature · violin
Cluster 16 3 NV2g006608000.1 5.63 23.0 62.0% feature · violin
Cluster 16 4 NV2g016803000.1 1.80 21.8 91.5% feature · violin
Cluster 16 5 NV2g003837000.1 3.93 20.0 58.1% feature · violin
Cluster 16 6 NV2g002716000.1 3.90 18.7 54.4% feature · violin
Cluster 16 7 NV2g009336000.1 3.78 18.2 53.1% feature · violin
Cluster 16 8 NV2g018825000.1 3.44 17.4 52.1% feature · violin
Cluster 16 9 NV2g004477000.1 3.04 17.2 54.2% feature · violin
Cluster 16 10 NV2g019104000.1 1.01 17.0 98.5% feature · violin
Cluster 16 11 NV2g009843000.1 2.12 16.6 65.1% feature · violin
Cluster 16 12 NV2g023233000.1 2.30 16.4 61.4% feature · violin
Cluster 16 13 NV2g003189000.1 1.06 16.3 95.2% feature · violin
Cluster 16 14 NV2g008570000.1 0.86 16.2 99.6% feature · violin
Cluster 16 15 NV2g013296000.1 3.15 16.0 48.8% feature · violin
Cluster 16 16 NV2g014259000.1 2.72 15.4 50.8% feature · violin
Cluster 16 17 NV2g009104000.1 2.98 15.2 47.9% feature · violin
Cluster 16 18 NV2g006253000.1 1.25 14.9 96.7% feature · violin
Cluster 16 19 NV2g009935000.1 2.44 14.6 53.3% feature · violin
Cluster 16 20 NV2g008759000.1 1.49 14.6 75.3% feature · violin
Cluster 16 21 NV2g003046000.1 1.43 14.3 78.6% feature · violin
Cluster 16 22 NV2g018827000.1 3.61 14.2 41.3% feature · violin
Cluster 16 23 NV2g012641000.1 3.33 13.8 40.9% feature · violin
Cluster 16 24 NV2g011339000.1 1.23 13.4 81.7% feature · violin
Cluster 16 25 NV2g007884000.1 1.16 13.3 90.7% feature · violin
Cluster 16 26 NV2g015996000.1 1.15 13.2 91.3% feature · violin
Cluster 16 27 NV2g005043000.1 1.28 12.9 78.2% feature · violin
Cluster 16 28 NV2g014132000.1 1.33 12.9 71.4% feature · violin
Cluster 16 29 NV2g000437000.1 4.26 12.8 35.3% feature · violin
Cluster 16 30 NV2g017367000.1 1.90 12.6 50.4% feature · violin
Cluster 16 31 NV2g017599000.1 1.81 12.6 54.6% feature · violin
Cluster 16 32 NV2g004094000.1 1.46 12.4 61.8% feature · violin
Cluster 16 33 NV2g005541000.1 0.83 12.4 95.2% feature · violin
Cluster 16 34 NV2g010382000.1 2.49 12.3 41.3% feature · violin
Cluster 16 35 NV2g024090000.1 0.71 12.2 96.3% feature · violin
Cluster 16 36 NV2g007706000.1 1.09 12.1 84.7% feature · violin
Cluster 16 37 NV2g020304000.1 1.16 12.0 82.0% feature · violin
Cluster 16 38 NV2g005093000.1 3.44 12.0 35.1% feature · violin
Cluster 16 39 NV2g008421000.1 2.82 11.9 38.6% feature · violin
Cluster 16 40 NV2g011252000.1 0.97 11.8 89.6% feature · violin
Cluster 16 41 NV2g023552000.1 1.66 11.7 52.3% feature · violin
Cluster 16 42 NV2g008624000.1 1.17 11.7 70.8% feature · violin
Cluster 16 43 NV2g015962000.1 1.20 11.7 70.7% feature · violin
Cluster 16 44 NV2g020947000.1 1.23 11.5 64.5% feature · violin
Cluster 16 45 NV2g019915000.1 1.18 11.5 70.3% feature · violin
Cluster 16 46 NV2g016294000.1 1.38 11.4 56.2% feature · violin
Cluster 16 47 NV2g004125000.1 1.03 11.3 80.9% feature · violin
Cluster 16 48 NV2g015081000.1 1.13 11.3 72.0% feature · violin
Cluster 16 49 NV2g012090000.1 1.26 11.3 62.5% feature · violin
Cluster 16 50 NV2g021452000.1 1.18 11.3 68.7% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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