Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| OS493_024002-T1 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE | 1 | positive |
| OS493_011165-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 0.86 | positive |
| OS493_016338-T1 | -- | 0.84 | positive |
| OS493_033047-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER | 0.83 | positive |
| OS493_005739-T1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 0.83 | positive |
| OS493_028818-T1 | DYNACTIN SUBUNIT | 0.82 | positive |
| OS493_001794-T1 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE | 0.82 | positive |
| OS493_001190-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED | 0.81 | positive |
| OS493_032899-T1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 | 0.80 | positive |
| OS493_010972-T1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED | 0.80 | positive |
| OS493_000138-T1 | URIDINE KINASE | 0.80 | positive |
| OS493_017887-T1 | POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN | 0.79 | positive |
| OS493_030027-T1 | CHAPERONIN | 0.79 | positive |
| OS493_021973-T1 | RIBOSOME BIOGENESIS PROTEIN BRIX | 0.79 | positive |
| OS493_029093-T1 | ATAXIN 2-BINDING PROTEIN 1-RELATED | 0.78 | positive |
| OS493_002620-T1 | RAG1-ACTIVATING PROTEIN 1 | 0.78 | positive |
| OS493_036048-T1 | PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 | 0.78 | positive |
| OS493_001268-T1 | OPTICIN | 0.77 | positive |
| OS493_001462-T1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 0.77 | positive |
| OS493_003360-T1 | LD44762P | 0.77 | positive |
| OS493_039001-T1 | MINA53 MYC INDUCED NUCLEAR ANTIGEN | 0.77 | positive |
| OS493_029484-T1 | GLUTATHIONE REDUCTASE | 0.77 | positive |
| OS493_031624-T1 | TRANSCRIPTION INITIATION FACTOR TFIID | 0.77 | positive |
| OS493_025108-T1 | -- | 0.76 | positive |
| OS493_016920-T1 | PRESEQUENCE PROTEASE | 0.76 | positive |
| OS493_014877-T1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE | 0.76 | positive |
| OS493_034166-T1 | UBIQUITIN-ACTIVATING ENZYME E1 | 0.76 | positive |
| OS493_015906-T1 | NUCLEOPORIN NUP84-RELATED | 0.76 | positive |
| OS493_005005-T1 | M-PHASE PHOSPHOPROTEIN 6 | 0.75 | positive |
| OS493_009190-T1 | DUF814-RELATED | 0.74 | positive |
| OS493_028447-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA | 0.74 | positive |
| OS493_021691-T1 | ERO1-RELATED | 0.74 | positive |
| OS493_012715-T1 | VESICLE PROTEIN SORTING-ASSOCIATED | 0.73 | positive |
| OS493_006526-T1 | BETA-ALANINE-ACTIVATING ENZYME | 0.73 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 76 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
