Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| OS493_034720-T1 | DUF614 FAMILY PROTEIN-RELATED | 1 | positive |
| OS493_037082-T1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 0.86 | positive |
| OS493_010220-T1 | PHOSPHOLIPID SCRAMBLASE-RELATED | 0.86 | positive |
| OS493_015559-T1 | VACUOLAR SORTING PROTEIN 35 | 0.85 | positive |
| OS493_023219-T1 | -- | 0.84 | positive |
| OS493_007678-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR | 0.84 | positive |
| OS493_009141-T1 | UNCHARACTERIZED | 0.84 | positive |
| OS493_009503-T1 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL | 0.84 | positive |
| OS493_021130-T1 | -- | 0.84 | positive |
| OS493_030228-T1 | DEDICATOR OF CYTOKINESIS DOCK | 0.83 | positive |
| OS493_006415-T1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER | 0.83 | positive |
| OS493_013598-T1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN | 0.83 | positive |
| OS493_029110-T1 | SERINE/THREONINE-PROTEIN KINASE 16 | 0.83 | positive |
| OS493_029119-T1 | BEIGE/BEACH-RELATED | 0.82 | positive |
| OS493_036211-T1 | POLYCOMB GROUP PROTEIN | 0.82 | positive |
| OS493_033324-T1 | SPHINGOSINE KINASE | 0.82 | positive |
| OS493_003652-T1 | -- | 0.81 | positive |
| OS493_039344-T1 | -- | 0.81 | positive |
| OS493_007517-T1 | LD44762P | 0.81 | positive |
| OS493_024642-T1 | -- | 0.81 | positive |
| OS493_033129-T1 | BCL-2 RELATED | 0.80 | positive |
| OS493_036736-T1 | PROTEASE M14 CARBOXYPEPTIDASE | 0.80 | positive |
| OS493_031046-T1 | -- | 0.80 | positive |
| OS493_012622-T1 | PROPERDIN | 0.80 | positive |
| OS493_005554-T1 | -- | 0.79 | positive |
| OS493_020668-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED | 0.79 | positive |
| OS493_009291-T1 | PROTEIN NIRF | 0.79 | positive |
| OS493_024938-T1 | -- | 0.79 | positive |
| OS493_015418-T1 | -- | 0.78 | positive |
| OS493_014075-T1 | CDNA SEQUENCE BC021608 | 0.78 | positive |
| OS493_005284-T1 | CALBINDIN | 0.77 | positive |
| OS493_019019-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN | 0.76 | positive |
| OS493_020514-T1 | PROLINE AND SERINE-RICH PROTEIN 1 | 0.73 | positive |
| OS493_005821-T1 | -- | 0.72 | positive |
| OS493_006408-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.68 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 88 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
