Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| evm.model.Ap12.293 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 1 | positive |
| evm.model.Ap4.4374 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 1.00 | positive |
| evm.model.Ap9.2674 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 1.00 | positive |
| evm.model.Ap9.1328 | -- | 0.99 | positive |
| Arg_357 | -- | 0.98 | positive |
| Thr_3612 | -- | 0.98 | positive |
| Thr_3737 | -- | 0.98 | positive |
| Thr_4662 | -- | 0.98 | positive |
| Thr_4665 | -- | 0.98 | positive |
| evm.model.Ap1.1150 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | 0.98 | positive |
| evm.model.Ap1.1953 | NATTERIN-4 | 0.98 | positive |
| evm.model.Ap10.1519 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.98 | positive |
| evm.model.Ap10.1531 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.98 | positive |
| evm.model.Ap11.1007 | -- | 0.98 | positive |
| evm.model.Ap11.1359 | LOC100145250 PROTEIN | 0.98 | positive |
| evm.model.Ap11.846 | -- | 0.98 | positive |
| evm.model.Ap12.1033 | PROTEIN CBG26694 | 0.98 | positive |
| evm.model.Ap12.1911 | -- | 0.98 | positive |
| evm.model.Ap13.1136 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 0.98 | positive |
| evm.model.Ap13.1558 | -- | 0.98 | positive |
| evm.model.Ap13.2297 | LD33695P | 0.98 | positive |
| evm.model.Ap13.2877 | GLUTAREDOXIN FAMILY MEMBER | 0.98 | positive |
| evm.model.Ap14.201 | -- | 0.98 | positive |
| evm.model.Ap2.2103 | -- | 0.98 | positive |
| evm.model.Ap2.2104 | -- | 0.98 | positive |
| evm.model.Ap2.2740 | -- | 0.98 | positive |
| evm.model.Ap3.1524 | -- | 0.98 | positive |
| evm.model.Ap3.2075 | -- | 0.98 | positive |
| evm.model.Ap4.1624 | -- | 0.98 | positive |
| evm.model.Ap4.3710 | -- | 0.98 | positive |
| evm.model.Ap4.6734 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.98 | positive |
| evm.model.Ap4.7080 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.98 | positive |
| evm.model.Ap5.2167_evm.model.Ap5.2177 | - | 0.98 | positive |
| evm.model.Ap5.281 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.98 | positive |
| evm.model.Ap6.1194 | -- | 0.98 | positive |
| evm.model.Ap6.396 | -- | 0.98 | positive |
| evm.model.Ap7.1548 | DNA HELICASE RECQ FAMILY MEMBER | 0.98 | positive |
| evm.model.Ap7.200 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED | 0.98 | positive |
| evm.model.Ap7.2082 | PROTEIN CBG26694 | 0.98 | positive |
| evm.model.Ap7.240 | DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN | 0.98 | positive |
| evm.model.Ap7.2865 | -- | 0.98 | positive |
| evm.model.Ap8.1089 | -- | 0.98 | positive |
| evm.model.Ap8.2011 | -- | 0.98 | positive |
| evm.model.Ap8.2720 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED | 0.98 | positive |
| evm.model.Ap8.891 | LEXA REPRESSOR-RELATED | 0.98 | positive |
| evm.model.Ap9.1526 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN | 0.98 | positive |
| evm.model.Ap9.2762 | FAM11A, B PROTEIN | 0.98 | positive |
| evm.model.Ap9.520 | -- | 0.98 | positive |
| evm.model.Ap9.98 | -- | 0.98 | positive |
| evm.model.Ap2.3296 | TRANSMEMBRANE PROTEIN 79 | 0.96 | positive |
| Thr_2331 | -- | 0.88 | positive |
| evm.model.Ap13.517 | OPSIN | 0.88 | positive |
| evm.model.Ap13.1791 | -- | 0.86 | positive |
| evm.model.Ap1.1249 | G PROTEIN-COUPLED RECEPTOR | 0.78 | positive |
| evm.model.Ap1.2183 | -- | 0.78 | positive |
| evm.model.Ap2.3405 | -- | 0.78 | positive |
| evm.model.Ap1.3905 | -- | 0.73 | positive |
| evm.model.Ap4.1604 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED | 0.73 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 1353 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
