Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| evm.model.Ap7.416 | -- | 1 | positive |
| evm.model.Ap8.1563 | -- | 0.98 | positive |
| evm.model.Ap4.3734 | -- | 0.96 | positive |
| Ala_1299 | -- | 0.94 | positive |
| Ala_1491 | -- | 0.90 | positive |
| Gly_3178 | -- | 0.90 | positive |
| Thr_1653 | -- | 0.90 | positive |
| Thr_2637 | -- | 0.90 | positive |
| Thr_3034 | -- | 0.90 | positive |
| Thr_327 | -- | 0.90 | positive |
| Thr_344 | -- | 0.90 | positive |
| Thr_3468 | -- | 0.90 | positive |
| Thr_3973 | -- | 0.90 | positive |
| Thr_4603 | -- | 0.90 | positive |
| Thr_716 | -- | 0.90 | positive |
| evm.model.Ap1.2126 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III | 0.90 | positive |
| evm.model.Ap1.3075 | L1 TRANSPOSABLE ELEMENT-RELATED | 0.90 | positive |
| evm.model.Ap1.3848 | HEH2P | 0.90 | positive |
| evm.model.Ap10.1629 | MUCIN 12EA-RELATED | 0.90 | positive |
| evm.model.Ap10.623 | REVERSE TRANSCRIPTASE | 0.90 | positive |
| evm.model.Ap11.398 | AMINO ACID TRANSPORTER | 0.90 | positive |
| evm.model.Ap11.535 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.90 | positive |
| evm.model.Ap11.555 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.90 | positive |
| evm.model.Ap12.1354 | LD33804P | 0.90 | positive |
| evm.model.Ap12.2066 | -- | 0.90 | positive |
| evm.model.Ap12.2198 | -- | 0.90 | positive |
| evm.model.Ap12.577 | KELCH PROTEIN | 0.90 | positive |
| evm.model.Ap13.1567 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 0.90 | positive |
| evm.model.Ap13.2589 | INOSITOL POLYPHOSPHATE KINASE 1 | 0.90 | positive |
| evm.model.Ap2.1108 | -- | 0.90 | positive |
| evm.model.Ap2.1632 | PUTATIVE-RELATED | 0.90 | positive |
| evm.model.Ap2.2474 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 0.90 | positive |
| evm.model.Ap2.2668 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.90 | positive |
| evm.model.Ap2.3161 | -- | 0.90 | positive |
| evm.model.Ap2.3966 | -- | 0.90 | positive |
| evm.model.Ap2.912 | 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE | 0.90 | positive |
| evm.model.Ap3.1089 | -- | 0.90 | positive |
| evm.model.Ap3.1459 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 0.90 | positive |
| evm.model.Ap3.1675 | -- | 0.90 | positive |
| evm.model.Ap3.959 | BTB/POZ DOMAIN-CONTAINING | 0.90 | positive |
| evm.model.Ap4.3636 | -- | 0.90 | positive |
| evm.model.Ap4.4909 | -- | 0.90 | positive |
| evm.model.Ap4.4985 | -- | 0.90 | positive |
| evm.model.Ap4.5197 | -- | 0.90 | positive |
| evm.model.Ap4.5199 | -- | 0.90 | positive |
| evm.model.Ap4.5459 | -- | 0.90 | positive |
| evm.model.Ap4.7243 | 5-HYDROXYTRYPTAMINE RECEPTOR | 0.90 | positive |
| evm.model.Ap5.1099 | G PROTEIN-COUPLED RECEPTOR-RELATED | 0.90 | positive |
| evm.model.Ap5.1680 | RETROTRANSPOSON | 0.90 | positive |
| evm.model.Ap5.2540 | SIGNAL PEPTIDE PEPTIDASE | 0.90 | positive |
| evm.model.Ap6.1069 | CUB DOMAIN-CONTAINING PROTEIN | 0.90 | positive |
| evm.model.Ap6.1212 | -- | 0.90 | positive |
| evm.model.Ap6.1501 | F-BOX ONLY PROTEIN 42 | 0.90 | positive |
| evm.model.Ap6.1550 | PROTEIN CBG23764 | 0.90 | positive |
| evm.model.Ap6.221 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN | 0.90 | positive |
| evm.model.Ap7.1011 | GUANYLATE BINDING PROTEIN | 0.90 | positive |
| evm.model.Ap7.2684 | -- | 0.90 | positive |
| evm.model.Ap7.586 | CARBOXYLESTERASE | 0.90 | positive |
| evm.model.Ap8.1051 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.90 | positive |
| evm.model.Ap8.1306 | -- | 0.90 | positive |
| evm.model.Ap8.1466 | CONTACTIN 5 | 0.90 | positive |
| evm.model.Ap8.1666 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN | 0.90 | positive |
| evm.model.Ap8.626 | LD33804P | 0.90 | positive |
| evm.model.Ap8.652 | LD33804P | 0.90 | positive |
| evm.model.Ap9.136 | SOLUTE CARRIER FAMILY 22 MEMBER 18 | 0.90 | positive |
| evm.model.Ap9.1594 | PUTATIVE-RELATED | 0.90 | positive |
| evm.model.Ap9.2305 | PERFORIN-LIKE PROTEIN 1 | 0.90 | positive |
| evm.model.Ap9.2418 | PROTEIN CBG23766 | 0.90 | positive |
| evm.model.Ap9.248 | -- | 0.90 | positive |
| evm.model.Ap9.514 | -- | 0.90 | positive |
| Thr_3207 | -- | 0.89 | positive |
| evm.model.Ap4.6014 | -- | 0.82 | positive |
| evm.model.Ap5.450 | -- | 0.76 | positive |
| evm.model.Ap1.1322 | -- | 0.75 | positive |
| evm.model.Ap10.1642 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 0.74 | positive |
| evm.model.Ap8.2033 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN | 0.72 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 2306 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
