Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g10103.t1 | -- | 1 | positive |
| g21379.t1 | SPIRE | 0.97 | positive |
| g358.t1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN | 0.96 | positive |
| g5090.t1 | F18C1.6 PROTEIN | 0.96 | positive |
| g28269.t1 | REGULATOR-RELATED | 0.96 | positive |
| g10066.t1 | -- | 0.96 | positive |
| g25763.t1 | TUMOR PROTEIN P53-INDUCIBLE PROTEIN 13 | 0.96 | positive |
| g7607.t1 | UNCHARACTERIZED | 0.96 | positive |
| g9074.t1 | 80 KDA MCM3-ASSOCIATED PROTEIN | 0.96 | positive |
| g10575.t1 | SERINE/THREONINE-PROTEIN KINASE | 0.95 | positive |
| g1411.t1 | DNA HELICASE RECQ FAMILY MEMBER | 0.95 | positive |
| g3591.t1 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA | 0.95 | positive |
| g2966.t1 | B-CELL TRANSLOCATION GENE | 0.95 | positive |
| g12609.t1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 | 0.95 | positive |
| g11783.t1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN | 0.94 | positive |
| g28728.t1 | AP ENDONUCLEASE | 0.94 | positive |
| g33745.t1 | ANKYRIN REPEAT PROTEIN | 0.94 | positive |
| g11549.t1 | UBIQUITIN THIOESTERASE | 0.92 | positive |
| g6581.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 0.92 | positive |
| g14109.t1 | BTB/POZ DOMAIN-CONTAINING | 0.92 | positive |
| g8058.t1 | INTEGRIN ALPHA | 0.92 | positive |
| g6460.t1 | EARLY ENDOSOME ANTIGEN 1 | 0.92 | positive |
| g27513.t1 | GLUCONOKINASE-RELATED | 0.91 | positive |
| g35003.t1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED | 0.91 | positive |
| g9919.t1 | SOLUTE CARRIER FAMILY 25 | 0.91 | positive |
| g9920.t1 | -- | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 135 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
