Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g10214.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g10214.t1

Gene ID	Description	PCC	Relationship
g10214.t1	TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED	1	positive
g27174.t1	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	0.94	positive
g8799.t1	RAP GTPASE-ACTIVATING PROTEIN	0.93	positive
g14423.t1	VPRBP PROTEIN-RELATED	0.93	positive
g27898.t1	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	0.93	positive
g15932.t1	--	0.93	positive
g3151.t1	SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2	0.93	positive
g3152.t1	MICROTUBULE-ASSOCIATED PROTEIN 9	0.92	positive
g9749.t1	--	0.92	positive
g4540.t1	CALPAIN	0.92	positive
g4321.t1	ADP-RIBOSYLGLYCOHYDROLASE	0.92	positive
g11669.t1	--	0.92	positive
g23935.t1	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	0.92	positive
g34960.t1	CBF1 INTERACTING COREPRESSOR CIR	0.92	positive
g12362.t1	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	0.92	positive
g6631.t1	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7	0.92	positive
g25844.t1	CARBOHYDRATE SULFOTRANSFERASE	0.92	positive
g14377.t1	NEUROPEPTIDE Y RECEPTOR	0.92	positive
g35285.t1	ATP-DEPENDENT RNA AND DNA HELICASE	0.91	positive
g20492.t1	CYCLIN	0.91	positive
g25977.t1	GLUCOSYLCERAMIDASE	0.91	positive
g9365.t1	SER/THR-RICH PROTEIN T10 IN DGCR REGION	0.90	positive
g1426.t1	NGG1 INTERACTING FACTOR 3	0.90	positive
g7289.t1	HEPARANASE	0.90	positive
g27591.t1	SOLUTE CARRIER FAMILY 52	0.90	positive
g8894.t1	PRENYLTRANSFERASES	0.82	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 101 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g14423.t1 g8799.t1
g35285.t1 g3151.t1
g8799.t1 g3151.t1
g15932.t1 g14423.t1
g23935.t1 g3152.t1
g23935.t1 g20492.t1
g25844.t1 g4321.t1
g4321.t1 g3151.t1
g4321.t1 g3152.t1
g27174.t1 g14423.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.