Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g10294.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g10294.t1
Gene ID Description PCC Relationship
g10294.t140S RIBOSOMAL PROTEIN S81positive
g2373.t130S RIBOSOMAL PROTEIN S10 FAMILY MEMBER1.00positive
g11092.t140S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S111.00positive
g12618.t160S RIBOSOMAL PROTEIN L271.00positive
g29715.t160S RIBOSOMAL PROTEIN L101.00positive
g29434.t1RIBOSOMAL PROTEIN L21.00positive
g5012.t1RIBOSOMAL PROTEIN L301.00positive
g3532.t1NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING0.99positive
g7514.t160S RIBOSOMAL PROTEIN L18A0.99positive
g27758.t160S RIBOSOMAL PROTEIN L170.99positive
g408.t140S RIBOSOMAL PROTEIN S60.99positive
g4708.t140S RIBOSOMAL PROTEIN S260.99positive
g96.t160S RIBOSOMAL PROTEIN L120.99positive
g8998.t1RIBOSOMAL PROTEIN S70.99positive
g5527.t160S RIBOSOMAL PROTEIN L130.99positive
g5274.t1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN0.99positive
g8688.t1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER0.99positive
g5014.t160S ACIDIC RIBOSOMAL PROTEIN P10.99positive
g23611.t160S RIBOSOMAL PROTEIN L240.99positive
g27704.t1--0.99positive
g102.t140S RIBOSOMAL PROTEIN S240.99positive
g7792.t1GLUTAMATE SEMIALDEHYDE DEHYDROGENASE0.99positive
g16171.t160S RIBOSOMAL PROTEIN L40.99positive
g12409.t130S/40S RIBOSOMAL PROTEIN S30.99positive
g34812.t160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER0.99positive
g17013.t1LIPASE0.99positive
g16555.t160S RIBOSOMAL PROTEIN L380.99positive
g16617.t160S RIBOSOMAL PROTEIN L180.99positive
g4819.t130S/40S RIBOSOMAL PROTEIN S40.99positive
g757.t1--0.99positive
g10587.t160S RIBOSOMAL PROTEIN L11-RELATED0.99positive
g3968.t1--0.99positive
g12115.t1FRUCTOSE-BISPHOSPHATE ALDOLASE0.99positive
g4556.t1INORGANIC PYROPHOSPHATASE0.99positive
g17017.t1LIPASE0.99positive
g7491.t1UNCHARACTERIZED0.99positive
g14332.t1MALATE DEHYDROGENASE0.99positive
g15770.t1CYSTEINE-RICH SECRETORY PROTEIN-RELATED0.99positive
g14906.t160S RIBOSOMAL PROTEIN L70.99positive
g2157.t1POTASSIUM CHANNEL, SUBFAMILY K0.98positive
g2081.t1CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 10.98positive
g9009.t1AUTOPHAGY PROTEIN 50.98positive
g21061.t1PENICILLIN-BINDING PROTEIN0.98positive
g12749.t1ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL0.98positive
g625.t1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 120.98positive
g27479.t1--0.98positive
g14341.t1L-THREONINE ALDOLASE-RELATED0.98positive
g2139.t1--0.98positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 389 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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