Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g10331.t1 | DEUBIQUITINATING PROTEIN VCIP135 | 1 | positive |
| g6430.t1 | SWAP-70 RECOMBINASE | 0.97 | positive |
| g27187.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.97 | positive |
| g3404.t1 | CEREBRAL PROTEIN-11-RELATED | 0.97 | positive |
| g16764.t1 | YY1 ASSOCIATED PROTEIN-RELATED | 0.97 | positive |
| g16763.t1 | -- | 0.97 | positive |
| g6346.t1 | MERLIN/MOESIN/EZRIN/RADIXIN | 0.97 | positive |
| g5818.t1 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN | 0.96 | positive |
| g3318.t1 | -- | 0.96 | positive |
| g19648.t1 | CENTROMERE PROTEIN E | 0.96 | positive |
| g402.t1 | -- | 0.96 | positive |
| g4160.t1 | -- | 0.96 | positive |
| g13812.t1 | RETINOBLASTOMA BINDING PROTEIN 8 | 0.96 | positive |
| g10641.t1 | DYNEIN LIGHT INTERMEDIATE CHAIN | 0.96 | positive |
| g4161.t1 | MULTICOPPER OXIDASE-RELATED | 0.96 | positive |
| g16204.t1 | GAMETOGENETIN-BINDING PROTEIN 2 | 0.96 | positive |
| g27755.t1 | HOMER | 0.96 | positive |
| g8719.t1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE | 0.95 | positive |
| g6432.t1 | SWAP-70 RECOMBINASE | 0.95 | positive |
| g6573.t1 | -- | 0.95 | positive |
| g12882.t1 | NNMT/PNMT/TEMT FAMILY MEMBER | 0.95 | positive |
| g12187.t1 | -- | 0.95 | positive |
| g27095.t1 | RIBONUCLEASE | 0.95 | positive |
| g5669.t1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 0.95 | positive |
| g32018.t1 | -- | 0.95 | positive |
| g13588.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR | 0.95 | positive |
| g633.t1 | MOLTING PROTEIN MLT-4 | 0.95 | positive |
| g13055.t1 | AGAP003327-PA | 0.95 | positive |
| g11802.t1 | -- | 0.95 | positive |
| g6427.t1 | UNCHARACTERIZED | 0.95 | positive |
| g2460.t1 | PROTEIN CBG12474 | 0.95 | positive |
| g5251.t1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 0.95 | positive |
| g9039.t1 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 | 0.95 | positive |
| g24847.t1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 0.95 | positive |
| g3928.t1 | BEN DOMAIN-CONTAINING PROTEIN 3 | 0.95 | positive |
| g19976.t1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 | 0.95 | positive |
| g27405.t1 | -- | 0.95 | positive |
| g3220.t1 | CEREBLON | 0.95 | positive |
| g27303.t1 | DYSTROGLYCAN-RELATED | 0.94 | positive |
| g8661.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II | 0.94 | positive |
| g12318.t1 | CLASP | 0.94 | positive |
| g15206.t1 | -- | 0.94 | positive |
| g32561.t1 | -- | 0.93 | positive |
| g5496.t1 | HL01030P-RELATED | 0.92 | positive |
| g28201.t1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED | 0.92 | positive |
| g21308.t1 | BONUS, ISOFORM C-RELATED | 0.91 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 244 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
