Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g10422.t1 | DNA HELICASE RECQ FAMILY MEMBER | 1 | positive |
| g19552.t1 | SEC31-RELATED PROTEIN | 0.90 | positive |
| g20801.t1 | WD REPEAT-CONTAINING PROTEIN 55 | 0.89 | positive |
| g27949.t1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED | 0.88 | positive |
| g24048.t1 | PROTEASOME MATURATION PROTEIN UMP1 | 0.86 | positive |
| g14202.t1 | KIAA0586 PROTEIN | 0.86 | positive |
| g2198.t1 | APOPTOSIS-INDUCING FACTOR 1 | 0.86 | positive |
| g5379.t1 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN | 0.86 | positive |
| g31982.t1 | PESCADILLO - RELATED | 0.85 | positive |
| g3015.t1 | DNA2/NAM7 HELICASE FAMILY MEMBER | 0.84 | positive |
| g34704.t1 | FERRITIN | 0.84 | positive |
| g30302.t1 | TOLL-INTERACTING PROTEIN | 0.84 | positive |
| g1466.t1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 | 0.83 | positive |
| g17342.t1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED | 0.82 | positive |
| g1544.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.82 | positive |
| g17854.t1 | 50S RIBOSOMAL PROTEIN L21 | 0.82 | positive |
| g8781.t1 | CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN | 0.81 | positive |
| g8217.t1 | UBIQUITIN-ACTIVATING ENZYME E1 | 0.81 | positive |
| g3217.t1 | GPALPP MOTIFS-CONTAINING PROTEIN 1 | 0.80 | positive |
| g2529.t1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE | 0.77 | positive |
| g19247.t1 | LYSOPHOSPHOLIPASE-RELATED | 0.76 | positive |
| g71.t1 | - | 0.76 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 120 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
