Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g10546.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g10546.t1
Gene ID Description PCC Relationship
g10546.t1HEPARANASE1positive
g3269.t1DEHYDROGENASE RELATED0.87positive
g8533.t1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED0.87positive
g4456.t1ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE0.86positive
g2383.t1NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED0.85positive
g35048.t1ENOYL-COA HYDRATASE-RELATED0.85positive
g11956.t1ATP-DEPENDENT RNA HELICASE DBP30.85positive
g15095.t1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE0.84positive
g4998.t1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED0.83positive
g3909.t1SERINE / THREONINE RACEMASE FAMILY MEMBER0.81positive
g22008.t1PHOSPHOTRIESTERASE-RELATED0.81positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 26 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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