Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g10632.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g10632.t1

Gene ID	Description	PCC	Relationship
g10632.t1	XYLOSYLTRANSFERASE OXT	1	positive
g14128.t1	TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED	0.96	positive
g10629.t1	LIN-9	0.96	positive
g9394.t1	SCY1-RELATED S/T PROTEIN KINASE-LIKE	0.95	positive
g4776.t1	WD REPEAT-CONTAINING PROTEIN 75	0.95	positive
g5540.t1	--	0.95	positive
g29356.t1	S-ADENOSYL-METHYLTRANSFERASE MRAW	0.95	positive
g27537.t1	--	0.95	positive
g8571.t1	DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN	0.95	positive
g6421.t1	39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL	0.95	positive
g12376.t1	SENTRIN-SPECIFIC PROTEASE	0.95	positive
g4825.t1	UPF0240 PROTEIN	0.94	positive
g15829.t1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	0.94	positive
g112.t1	GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1	0.94	positive
g11483.t1	RIBOSOME BIOGENESIS PROTEIN	0.94	positive
g23778.t1	WD-40 REPEAT PROTEIN	0.93	positive
g12776.t1	VIRAL IAP-ASSOCIATED FACTOR HOMOLOG	0.93	positive
g7610.t1	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	0.93	positive
g16888.t1	TRANSCRIPTIONAL REPRESSOR P66-RELATED	0.93	positive
g1836.t1	ANOCTAMIN	0.93	positive
g10789.t1	FRUCTOSE-2,6-BISPHOSPHATASE TIGAR	0.93	positive
g17399.t1	SLD5 PROTEIN	0.92	positive
g10631.t1	XYLOSYLTRANSFERASE OXT	0.92	positive
g9458.t1	TRANSMEMBRANE PROTEIN 33	0.92	positive
g26760.t1	--	0.92	positive
g7703.t1	PROTEIN C11ORF74	0.92	positive
g11122.t1	PROTEIN CIP2A	0.91	positive
g15764.t1	HIGH MOBILITY GROUP PROTEIN 2	0.91	positive
g8231.t1	FAST LEU-RICH DOMAIN-CONTAINING	0.91	positive
g28862.t1	--	0.89	positive
g3089.t1	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	0.88	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 144 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g14128.t1 g10629.t1
g11483.t1 g10629.t1
g27537.t1 g15829.t1
g12376.t1 g10629.t1
g10629.t1 g7610.t1
g14128.t1 g11483.t1
g11483.t1 g7610.t1
g17399.t1 g7610.t1
g10629.t1 g4825.t1
g17399.t1 g11483.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.