Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g10641.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g10641.t1

Gene ID	Description	PCC	Relationship
g10641.t1	DYNEIN LIGHT INTERMEDIATE CHAIN	1	positive
g3404.t1	CEREBRAL PROTEIN-11-RELATED	0.97	positive
g13588.t1	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	0.96	positive
g19648.t1	CENTROMERE PROTEIN E	0.96	positive
g20120.t1	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	0.96	positive
g10331.t1	DEUBIQUITINATING PROTEIN VCIP135	0.96	positive
g3851.t1	SI:DKEY-256H2.1	0.96	positive
g16764.t1	YY1 ASSOCIATED PROTEIN-RELATED	0.96	positive
g16763.t1	--	0.96	positive
g29087.t1	AP COMPLEX SUBUNIT MU	0.96	positive
g27187.t1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	0.96	positive
g25542.t1	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	0.95	positive
g11254.t1	SPINSTER	0.95	positive
g4586.t1	MATERNAL EFFECT PROTEIN STAUFEN	0.95	positive
g13129.t1	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	0.95	positive
g8844.t1	KINESIN-LIKE PROTEIN KIN-12D	0.95	positive
g19336.t1	CELL FATE DETERMINING PROTEIN MAB21-RELATED	0.95	positive
g22100.t1	3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN	0.95	positive
g8663.t1	CASPASE	0.95	positive
g16204.t1	GAMETOGENETIN-BINDING PROTEIN 2	0.95	positive
g5326.t1	D-GLUCURONYL C5-EPIMERASE	0.95	positive
g4496.t1	VINCULIN	0.95	positive
g27303.t1	DYSTROGLYCAN-RELATED	0.95	positive
g572.t1	ACTIN	0.95	positive
g23297.t1	PROTEIN DISPATCHED-RELATED	0.94	positive
g2601.t1	SKICH DOMAIN-CONTAINING PROTEIN	0.94	positive
g8661.t1	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II	0.94	positive
g27095.t1	RIBONUCLEASE	0.94	positive
g8672.t1	CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL	0.94	positive
g33089.t1	DNA2/NAM7 HELICASE FAMILY	0.93	positive
g6573.t1	--	0.93	positive
g29626.t1	KATANIN P80 SUBUNIT	0.93	positive
g22154.t1	N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1	0.93	positive
g1231.t1	--	0.93	positive
g12495.t1	--	0.91	positive
g34761.t1	RAI16 PROTEIN-RELATED	0.91	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 179 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g27187.t1 g3404.t1
g25542.t1 g20120.t1
g20120.t1 g8844.t1
g19648.t1 g4586.t1
g16764.t1 g16763.t1
g4586.t1 g2601.t1
g27187.t1 g10331.t1
g16204.t1 g3404.t1
g20120.t1 g19336.t1
g25542.t1 g19336.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.