Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g1102.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g1102.t1
Gene ID Description PCC Relationship
g1102.t1VOLTAGE-GATED POTASSIUM CHANNEL1positive
g1938.t1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED0.99positive
g6416.t1--0.99positive
g7913.t1SYNAPSIN0.99positive
g31641.t152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED0.99positive
g7.t1NEUROTRANSMITTER GATED ION CHANNEL0.99positive
g8733.t1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN0.98positive
g30478.t1--0.98positive
g4220.t1CYSTEINE-RICH SECRETORY PROTEIN-RELATED0.98positive
g14627.t1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA0.98positive
g14023.t1LYSYL OXIDASE-LIKE-RELATED0.98positive
g15495.t1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED0.98positive
g16088.t1PROTEIN CBG053490.98positive
g6876.t1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE0.98positive
g4326.t1FIBROBLAST GROWTH FACTOR RECEPTOR0.98positive
g16324.t1ATP-BINDING CASSETTE SUB-FAMILY C0.98positive
g35098.t1TRANSIENT RECEPTOR POTENTIAL CHANNEL0.98positive
g2743.t1G-PROTEIN COUPLED RECEPTOR0.98positive
g35485.t1MULTICOPPER OXIDASE-RELATED0.98positive
g1558.t1--0.98positive
g28416.t1CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB0.98positive
g3134.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED0.97positive
g14970.t1--0.95positive
g8932.t1C2H2-TYPE DOMAIN-CONTAINING PROTEIN0.93positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 77 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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