Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g11107.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g11107.t1
Gene ID Description PCC Relationship
g11107.t1MALE FERTILITY FACTOR KL51positive
g32240.t1DYNEIN HEAVY CHAIN FAMILY PROTEIN0.99positive
g11108.t1MALE FERTILITY FACTOR KL50.99positive
g4045.t1MALE FERTILITY FACTOR KL50.99positive
g4150.t1--0.99positive
g17858.t1DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 10.99positive
g28451.t1MALE FERTILITY FACTOR KL50.98positive
g20167.t1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN0.98positive
g4151.t1DYNEIN HEAVY CHAIN0.98positive
g1762.t1--0.98positive
g10529.t1ORGANIC ANION TRANSPORTER0.98positive
g24694.t1SLR5058 PROTEIN0.98positive
g2945.t1DYNEIN HEAVY CHAIN FAMILY PROTEIN0.98positive
g7390.t1DED DOMAIN-CONTAINING PROTEIN0.98positive
g25776.t1--0.98positive
g4148.t1--0.98positive
g11110.t1RETROTRANSPOSON0.98positive
g1558.t1--0.97positive
g4782.t1POLYCYSTIN-10.97positive
g11565.t1--0.97positive
g9835.t1DYNEIN HEAVY CHAIN0.97positive
g23532.t1COLLAGEN0.97positive
g10757.t1DYNEIN HEAVY CHAIN0.97positive
g25492.t1MACROGLOBULIN / COMPLEMENT0.97positive
g34671.t1UNCHARACTERIZED0.97positive
g33794.t1--0.97positive
g10767.t1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN0.97positive
g17439.t1--0.96positive
g17.t1ADHESION G-PROTEIN COUPLED RECEPTOR V10.96positive
g18320.t1DYNEIN HEAVY CHAIN FAMILY PROTEIN0.96positive
g33840.t1DYNEIN HEAVY CHAIN0.96positive
g4685.t1MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G0.96positive
g2571.t1SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES20.93positive
g2616.t1PHD-TYPE DOMAIN-CONTAINING PROTEIN0.93positive
g3568.t1--0.92positive
g4040.t1SODIUM/POTASSIUM/CALCIUM EXCHANGER0.92positive
g32117.t1--0.89positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 180 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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