Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g11136.t1 | ZINC FINGER PROTEIN AEBP2 | 1 | positive |
| g11201.t1 | PA-PL1 PHOSPHOLIPASE FAMILY | 0.98 | positive |
| g9758.t1 | -- | 0.98 | positive |
| g17899.t1 | AGAP011572-PA | 0.97 | positive |
| g28721.t1 | INTEGRATOR COMPLEX SUBUNIT 2 | 0.97 | positive |
| g2590.t1 | LEO1 PROTEIN | 0.97 | positive |
| g20090.t1 | LD33804P | 0.97 | positive |
| g9206.t1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING | 0.97 | positive |
| g10016.t1 | NY-REN-41 ANTIGEN L15 -RELATED | 0.97 | positive |
| g2090.t1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED | 0.96 | positive |
| g6007.t1 | NKAP DOMAIN-CONTAINING 1 | 0.96 | positive |
| g13577.t1 | AP COMPLEX SUBUNIT MU | 0.96 | positive |
| g1481.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 0.96 | positive |
| g9691.t1 | NUCLEASE-RELATED | 0.96 | positive |
| g30043.t1 | SARCOMA ANTIGEN NY-SAR-95-RELATED | 0.96 | positive |
| g5885.t1 | RIBOSOMAL RNA METHYLTRANSFERASE | 0.96 | positive |
| g34984.t1 | MYOTUBULARIN-RELATED | 0.96 | positive |
| g12376.t1 | SENTRIN-SPECIFIC PROTEASE | 0.96 | positive |
| g2481.t1 | -- | 0.96 | positive |
| g11200.t1 | PA-PL1 PHOSPHOLIPASE FAMILY | 0.96 | positive |
| g870.t1 | UNCHARACTERIZED | 0.96 | positive |
| g21924.t1 | RE40534P-RELATED | 0.96 | positive |
| g3004.t1 | EAP30 SUBUNIT OF ELL COMPLEX | 0.96 | positive |
| g28815.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g14372.t1 | FIP1-LIKE 1 PROTEIN | 0.96 | positive |
| g5393.t1 | RUNT RELATED | 0.96 | positive |
| g11975.t1 | COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 | 0.96 | positive |
| g23526.t1 | -- | 0.96 | positive |
| g35422.t1 | PROTEIN TAG-278-RELATED | 0.95 | positive |
| g6650.t1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 | 0.95 | positive |
| g6421.t1 | 39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL | 0.95 | positive |
| g12869.t1 | RIBONUCLEASE | 0.95 | positive |
| g3032.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.95 | positive |
| g5352.t1 | RETINOVIN-RELATED | 0.95 | positive |
| g4776.t1 | WD REPEAT-CONTAINING PROTEIN 75 | 0.95 | positive |
| g11417.t1 | DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS | 0.95 | positive |
| g29750.t1 | -- | 0.95 | positive |
| g5854.t1 | -- | 0.95 | positive |
| g4097.t1 | -- | 0.95 | positive |
| g8668.t1 | PRE-MRNA-SPLICING FACTOR RBM22 | 0.95 | positive |
| g112.t1 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 | 0.95 | positive |
| g7286.t1 | PROTEIN TOPAZ1 | 0.95 | positive |
| g29564.t1 | METHYLTRANSFERASE | 0.94 | positive |
| g32113.t1 | -- | 0.94 | positive |
| g6474.t1 | DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1 | 0.94 | positive |
| g9455.t1 | -- | 0.94 | positive |
| g14884.t1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 321 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
