Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g11290.t1 | - | 1 | positive |
| g18162.t1 | VILLIN | 0.81 | positive |
| g23773.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D | 0.81 | positive |
| g11685.t1 | KU AUTOANTIGEN DNA HELICASE | 0.79 | positive |
| g2985.t1 | -- | 0.79 | positive |
| g637.t1 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE | 0.78 | positive |
| g11913.t1 | IMPORTIN-7, 8, 11 | 0.77 | positive |
| g17207.t1 | BLUE CHEESE | 0.76 | positive |
| g11621.t1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG | 0.76 | positive |
| g7932.t1 | - | 0.76 | positive |
| g12377.t1 | METABOTROPIC GLUTAMATE RECEPTOR | 0.75 | positive |
| g35569.t1 | ZINC METALLOPROTEINASE-RELATED | 0.75 | positive |
| g32423.t1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED | 0.74 | positive |
| g2697.t1 | LYSOSOMAL COBALAMIN TRANSPORTER-RELATED | 0.74 | positive |
| g7724.t1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI | 0.74 | positive |
| g14401.t1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG | 0.74 | positive |
| g21736.t1 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN | 0.74 | positive |
| g5479.t1 | SERINE PROTEASE INHIBITOR | 0.73 | positive |
| g25483.t1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 | 0.73 | positive |
| g5817.t1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 2 | 0.73 | positive |
| g3678.t1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN | 0.73 | positive |
| g5489.t1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED | 0.72 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 61 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
