Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g11684.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g11684.t1
Gene ID Description PCC Relationship
g11684.t1TESTIS-EXPRESSED PROTEIN 521positive
g34657.t1RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 20.98positive
g35333.t1TETRATRICOPEPTIDE REPEAT PROTEIN 290.98positive
g10212.t1--0.98positive
g24914.t1LYMPHOCYTE EXPANSION MOLECULE0.98positive
g7959.t1P25 ALPHA-RELATED0.98positive
g15.t1SHIPPO-1-RELATED0.98positive
g6525.t1STABILIZER OF AXONEMAL MICROTUBULES 20.98positive
g14994.t1RADIAL SPOKE HEAD 1 HOMOLOG0.98positive
g2738.t1TEKTIN0.97positive
g479.t1--0.97positive
g3593.t1TEKTIN0.97positive
g5355.t1RBPJ-INTERACTING AND TUBULIN-ASSOCIATED PROTEIN 10.97positive
g19702.t1SPERMATOGENESIS-ASSOCIATED PROTEIN 70.97positive
g2280.t1SI:DKEY-97L20.60.97positive
g20612.t1--0.97positive
g27661.t1--0.97positive
g20310.t1PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED0.97positive
g13418.t1SHIPPO-1-RELATED0.97positive
g19119.t1RIKEN CDNA 1700001C19 GENE0.97positive
g3163.t1RIB43A-RELATED0.97positive
g18433.t1DUAL SPECIFICITY PROTEIN KINASE0.97positive
g24956.t1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE0.96positive
g6842.t1UNCHARACTERIZED0.96positive
g17215.t1TRAF3-INTERACTING PROTEIN 10.96positive
g12332.t1ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1C0.96positive
g27720.t1ARMADILLO-TYPE FOLD-RELATED0.96positive
g28151.t1WD REPEAT-CONTAINING PROTEIN POP10.96positive
g13891.t1SOWAH (DROSOPHILA) HOMOLOG0.96positive
g31100.t1FAST LEU-RICH DOMAIN-CONTAINING0.96positive
g17214.t1--0.95positive
g21862.t1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN0.95positive
g24915.t1--0.95positive
g21781.t1SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 10.92positive
g14081.t1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED0.91positive
g21032.t1--0.83positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 198 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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