Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g12003.t1 | -- | 1 | positive |
| g1428.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.98 | positive |
| g24142.t1 | X-BOX BINDING PROTEIN 1 | 0.97 | positive |
| g5613.t1 | AMMONIUM TRANSPORTER | 0.97 | positive |
| g2504.t1 | SLR5058 PROTEIN | 0.97 | positive |
| g619.t1 | - | 0.97 | positive |
| g36640.t1 | SYNAPTOTAGMIN 14, ISOFORM D | 0.97 | positive |
| g2934.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | 0.97 | positive |
| g2955.t1 | ASPARTYL PROTEASE-RELATED | 0.97 | positive |
| g22702.t1 | SOLUTE CARRIER FAMILY 35 | 0.97 | positive |
| g11655.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 | 0.97 | positive |
| g23789.t1 | MALATE SYNTHASE | 0.97 | positive |
| g27347.t1 | PROTEIN CBG16200 | 0.97 | positive |
| g5927.t1 | ALPHA-L-FUCOSIDASE | 0.97 | positive |
| g467.t1 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 0.96 | positive |
| g18267.t1 | TRANSCRIPTION ELONGATION FACTOR SPT6 | 0.96 | positive |
| g13404.t1 | FORKHEAD BOX PROTEIN O | 0.96 | positive |
| g12274.t1 | ATP-CITRATE SYNTHASE | 0.96 | positive |
| g993.t1 | ADENOSINE/GUANOSINE DIPHOSPHATASE | 0.96 | positive |
| g1197.t1 | DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE, PUTATIVE-RELATED | 0.96 | positive |
| g16765.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 0.96 | positive |
| g33056.t1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE | 0.96 | positive |
| g581.t1 | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | 0.96 | positive |
| g5040.t1 | UNCHARACTERIZED | 0.96 | positive |
| g12303.t1 | DOPAMINE BETA HYDROXYLASE RELATED | 0.96 | positive |
| g3327.t1 | - | 0.96 | positive |
| g6321.t1 | PROTEASE M14 CARBOXYPEPTIDASE | 0.96 | positive |
| g21652.t1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE | 0.96 | positive |
| g5329.t1 | SYNAPTOTAGMIN 14, ISOFORM D | 0.96 | positive |
| g7130.t1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN | 0.96 | positive |
| g10464.t1 | LD33804P | 0.95 | positive |
| g2885.t1 | TYROSINE-PROTEIN KINASE | 0.95 | positive |
| g29909.t1 | -- | 0.95 | positive |
| g11024.t1 | CALSYNTENIN | 0.95 | positive |
| g16483.t1 | -- | 0.95 | positive |
| g25794.t1 | TRANSPOSASE, PUTATIVE-RELATED | 0.95 | positive |
| g23578.t1 | - | 0.95 | positive |
| g31262.t1 | -- | 0.95 | positive |
| g25391.t1 | EXPRESSED PROTEIN | 0.95 | positive |
| g7918.t1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g8806.t1 | RETROTRANSPOSON | 0.95 | positive |
| g18662.t1 | MAINTENANCE OF TELOMOERE CAPPING | 0.94 | positive |
| g10069.t1 | -- | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 274 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
