Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g12410.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g12410.t1

Gene ID	Description	PCC	Relationship
g12410.t1	NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED	1	positive
g2947.t1	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	0.96	positive
g33287.t1	DYNEIN HEAVY CHAIN	0.96	positive
g3329.t1	SOLUTE CARRIER FAMILY 22 MEMBER	0.95	positive
g516.t1	NEPHROCYSTIN	0.95	positive
g10208.t1	CORTACTIN AND DREBRIN	0.95	positive
g16087.t1	MACROGLOBULIN / COMPLEMENT	0.95	positive
g14709.t1	ADIPOLIN	0.95	positive
g5743.t1	UNC-13-4A, ISOFORM B	0.94	positive
g4078.t1	O-METHYLTRANSFERASE-RELATED	0.94	positive
g6364.t1	GROWTH FACTOR RECEPTOR-BOUND PROTEIN	0.94	positive
g11061.t1	--	0.93	positive
g4960.t1	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	0.93	positive
g15751.t1	UNCHARACTERIZED	0.93	positive
g1099.t1	UNCHARACTERIZED	0.93	positive
g26208.t1	COILED-COIL DOMAIN-CONTAINING PROTEIN 89	0.92	positive
g12412.t1	ACYL-COA SYNTHETASE	0.92	positive
g28887.t1	GLUTAMATE CYSTEINE LIGASE REGULATORY SUBUNIT	0.92	positive
g10512.t1	ARGININOSUCCINATE LYASE	0.92	positive
g5965.t1	--	0.84	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 71 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g33287.t1 g2947.t1
g2947.t1 g1099.t1
g12410.t1 g2947.t1
g5743.t1 g516.t1
g10208.t1 g516.t1
g33287.t1 g12410.t1
g10208.t1 g5743.t1
g12410.t1 g3329.t1
g12410.t1 g516.t1
g33287.t1 g1099.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.