Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g13660.t1 | METHYLTRANSFERASE | 1 | positive |
| g1478.t1 | -- | 0.97 | positive |
| g22059.t1 | -- | 0.97 | positive |
| g32256.t1 | DEOXYRIBODIPYRIMIDINE PHOTOLYASE | 0.97 | positive |
| g5854.t1 | -- | 0.97 | positive |
| g5353.t1 | SERINE/THREONINE-PROTEIN KINASE RIO1 | 0.97 | positive |
| g2090.t1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED | 0.97 | positive |
| g14208.t1 | LOQUACIOUS, ISOFORM B | 0.97 | positive |
| g16195.t1 | BTB/POZ DOMAIN-CONTAINING | 0.96 | positive |
| g3656.t1 | -- | 0.96 | positive |
| g26215.t1 | -- | 0.96 | positive |
| g1481.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 0.96 | positive |
| g28024.t1 | HSC70CB, ISOFORM G-RELATED | 0.96 | positive |
| g5958.t1 | XPA-BINDING PROTEIN 1-RELATED | 0.96 | positive |
| g10016.t1 | NY-REN-41 ANTIGEN L15 -RELATED | 0.96 | positive |
| g3739.t1 | PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR | 0.95 | positive |
| g31850.t1 | CENTROSOMAL PROTEIN OF 162 KDA | 0.95 | positive |
| g2184.t1 | GEM-ASSOCIATED PROTEIN 6 | 0.95 | positive |
| g20917.t1 | MED-6-RELATED | 0.95 | positive |
| g29564.t1 | METHYLTRANSFERASE | 0.95 | positive |
| g16665.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g19593.t1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER | 0.95 | positive |
| g35538.t1 | EXPORTIN-6 | 0.95 | positive |
| g5352.t1 | RETINOVIN-RELATED | 0.95 | positive |
| g36144.t1 | -- | 0.94 | positive |
| g3032.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.94 | positive |
| g18841.t1 | PROTEIN CBG26694 | 0.94 | positive |
| g20975.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g28618.t1 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE | 0.94 | positive |
| g29750.t1 | -- | 0.94 | positive |
| g18698.t1 | L-ASPARAGINASE | 0.93 | positive |
| g31818.t1 | LEUCOKININ RECEPTOR-RELATED | 0.93 | positive |
| g8366.t1 | NEUROTRANSMITTER GATED ION CHANNEL | 0.90 | positive |
| g31308.t1 | -- | 0.90 | positive |
| g29061.t1 | UNNAMED PRODUCT | 0.87 | positive |
| g22813.t1 | -- | 0.87 | positive |
| g9110.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.73 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 190 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
