Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g14432.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g14432.t1
Gene ID Description PCC Relationship
g14432.t1SRCR DOMAIN-CONTAINING PROTEIN1positive
g15256.t1COLLAGEN ALPHA0.99positive
g520.t1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED0.99positive
g4327.t1TYROSINE-PROTEIN KINASE RECEPTOR0.99positive
g6445.t1FIBRILLIN-RELATED0.99positive
g14669.t1COLLAGEN ALPHA0.99positive
g113.t1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING0.98positive
g25713.t1--0.98positive
g14949.t1--0.98positive
g27024.t1--0.98positive
g4073.t1TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG0.98positive
g26999.t1UNCHARACTERIZED0.98positive
g13282.t1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER0.98positive
g11109.t1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN0.98positive
g16502.t1BILE ACID BETA-GLUCOSIDASE-RELATED0.98positive
g29663.t1SAM DOMAIN-CONTAINING PROTEIN-RELATED0.98positive
g14614.t1TGF-BETA FAMILY0.98positive
g19554.t1NG370.98positive
g344.t1TNF RECEPTOR ASSOCIATED FACTOR0.98positive
g24434.t1--0.97positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 62 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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