Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g1478.t1 | -- | 1 | positive |
| g16195.t1 | BTB/POZ DOMAIN-CONTAINING | 0.98 | positive |
| g10016.t1 | NY-REN-41 ANTIGEN L15 -RELATED | 0.98 | positive |
| g2090.t1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED | 0.98 | positive |
| g16665.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.98 | positive |
| g13660.t1 | METHYLTRANSFERASE | 0.97 | positive |
| g28257.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED | 0.97 | positive |
| g21084.t1 | TRANSLATION FACTOR GUF1-RELATED | 0.97 | positive |
| g2998.t1 | ENHANCER OF POLYCOMB | 0.97 | positive |
| g5958.t1 | XPA-BINDING PROTEIN 1-RELATED | 0.97 | positive |
| g28024.t1 | HSC70CB, ISOFORM G-RELATED | 0.97 | positive |
| g3739.t1 | PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR | 0.97 | positive |
| g5767.t1 | UNCHARACTERIZED | 0.97 | positive |
| g22059.t1 | -- | 0.97 | positive |
| g2568.t1 | -- | 0.97 | positive |
| g8339.t1 | -- | 0.97 | positive |
| g5353.t1 | SERINE/THREONINE-PROTEIN KINASE RIO1 | 0.97 | positive |
| g20604.t1 | SPOT14 FAMILY MEMBER | 0.96 | positive |
| g9302.t1 | RING ZINC FINGER PROTEIN | 0.96 | positive |
| g27270.t1 | BOULE-RELATED | 0.96 | positive |
| g11704.t1 | PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE | 0.96 | positive |
| g5352.t1 | RETINOVIN-RELATED | 0.96 | positive |
| g31850.t1 | CENTROSOMAL PROTEIN OF 162 KDA | 0.96 | positive |
| g3032.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.96 | positive |
| g14208.t1 | LOQUACIOUS, ISOFORM B | 0.96 | positive |
| g28815.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g6584.t1 | GATA-TYPE ZINC FINGER PROTEIN 1 | 0.96 | positive |
| g3656.t1 | -- | 0.96 | positive |
| g19527.t1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | 0.96 | positive |
| g1243.t1 | TOLL-LIKE RECEPTOR | 0.96 | positive |
| g28727.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.95 | positive |
| g1679.t1 | BETA-HEXOSAMINIDASE | 0.95 | positive |
| g5854.t1 | -- | 0.95 | positive |
| g10333.t1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.95 | positive |
| g9788.t1 | -- | 0.95 | positive |
| g26215.t1 | -- | 0.95 | positive |
| g29564.t1 | METHYLTRANSFERASE | 0.95 | positive |
| g32455.t1 | -- | 0.94 | positive |
| g30521.t1 | -- | 0.94 | positive |
| g4495.t1 | -- | 0.94 | positive |
| g28274.t1 | -- | 0.94 | positive |
| g19593.t1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER | 0.94 | positive |
| g12783.t1 | -- | 0.93 | positive |
| g31818.t1 | LEUCOKININ RECEPTOR-RELATED | 0.93 | positive |
| g31308.t1 | -- | 0.89 | positive |
| g4072.t1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED | 0.86 | positive |
| g18116.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.83 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 318 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
