Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g15364.t1 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9 ZCCHC9 | 1 | positive |
| g810.t1 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 | 0.99 | positive |
| g15722.t1 | -- | 0.98 | positive |
| g20374.t1 | ATP-DEPENDENT RNA HELICASE | 0.98 | positive |
| g9361.t1 | DNA POLYMERASE DELTA SUBUNIT 4 | 0.97 | positive |
| g11185.t1 | MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED | 0.97 | positive |
| g30449.t1 | TRANSLATION FACTOR | 0.97 | positive |
| g4232.t1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 | 0.97 | positive |
| g34957.t1 | -- | 0.97 | positive |
| g3267.t1 | ADP RIBOSYLATION FACTOR-RELATED | 0.97 | positive |
| g16715.t1 | NAZO FAMILY MEMBER | 0.97 | positive |
| g845.t1 | BYSTIN | 0.96 | positive |
| g12385.t1 | OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1 | 0.96 | positive |
| g10221.t1 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 0.96 | positive |
| g17465.t1 | BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED | 0.96 | positive |
| g439.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.95 | positive |
| g27698.t1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.95 | positive |
| g34723.t1 | GLUTATHIONE PEROXIDASE | 0.95 | positive |
| g11305.t1 | THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING | 0.95 | positive |
| g27230.t1 | PEPTIDYL-TRNA HYDROLASE | 0.95 | positive |
| g5939.t1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 0.94 | positive |
| g2706.t1 | -- | 0.94 | positive |
| g19811.t1 | GLOMULIN | 0.94 | positive |
| g9312.t1 | ERO1-RELATED | 0.94 | positive |
| g24108.t1 | -- | 0.94 | positive |
| g9754.t1 | -- | 0.94 | positive |
| g33690.t1 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g23284.t1 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g20281.t1 | HOMEOBOX PROTEIN | 0.94 | positive |
| g2695.t1 | -- | 0.94 | positive |
| g19899.t1 | -- | 0.93 | positive |
| g13671.t1 | SI:CH211-108C17.2-RELATED-RELATED | 0.93 | positive |
| g25865.t1 | ARGININE OR CREATINE KINASE | 0.93 | positive |
| g8957.t1 | -- | 0.93 | positive |
| g6831.t1 | TRIHELIX TRANSCRIPTION FACTOR ASIL2 | 0.93 | positive |
| g11418.t1 | PETER PAN-RELATED | 0.93 | positive |
| g493.t1 | NUCLEAR HORMONE RECEPTOR | 0.93 | positive |
| g8539.t1 | FI14130P | 0.92 | positive |
| g32853.t1 | -- | 0.90 | positive |
| g16105.t1 | -- | 0.89 | positive |
| g4669.t1 | -- | 0.89 | positive |
| g31341.t1 | -- | 0.86 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 250 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
