Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g15476.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g15476.t1
Gene ID Description PCC Relationship
g15476.t1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 341positive
g35039.t1PF60.99positive
g26997.t1UNCHARACTERIZED0.99positive
g6324.t1SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 10.99positive
g27138.t1DYNEIN INTERMEDIATE CHAIN0.99positive
g15028.t1RADIAL SPOKEHEAD-RELATED0.99positive
g1280.t1TESTIS-EXPRESSED PROTEIN 360.99positive
g8486.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.99positive
g8769.t1OUTER SEGMENT 50.99positive
g34746.t1RADIAL SPOKEHEAD-RELATED0.99positive
g2611.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 690.99positive
g9093.t1WD-40 REPEAT PROTEIN0.98positive
g7216.t1NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR0.98positive
g19326.t1PBS LYASE HEAT-LIKE PROTEIN0.98positive
g10202.t1--0.98positive
g2862.t1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 320.98positive
g12451.t1CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED0.98positive
g7597.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED0.98positive
g22951.t1NEUROTRANSMITTER GATED ION CHANNEL0.98positive
g13821.t1AXONEMAL INNER ARM DYNEIN LIGHT CHAIN 280.98positive
g19799.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 2990.98positive
g28266.t1--0.98positive
g27154.t1TESTIS-EXPRESSED PROTEIN 450.98positive
g30775.t1MULTICOPPER OXIDASE-RELATED0.98positive
g24516.t1TESTIS-EXPRESSED PROTEIN 26 ISOFORM X30.98positive
g11276.t1--0.98positive
g26517.t1--0.97positive
g34940.t1HYPOTHETICAL PROTEIN LOC6911890.97positive
g14071.t1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN0.97positive
g4276.t1SHIPPO-1-RELATED0.97positive
g8953.t1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN0.97positive
g7828.t1DYNEIN INTERMEDIATE CHAIN0.97positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 218 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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