Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g160.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g160.t1

Gene ID	Description	PCC	Relationship
g160.t1	DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG	1	positive
g28413.t1	--	0.94	positive
g10730.t1	PROTEIN DISPATCHED HOMOLOG 3	0.93	positive
g8996.t1	FLOTILLIN-RELATED	0.93	positive
g10836.t1	14-3-3 PROTEIN	0.93	positive
g11320.t1	NETRIN/LAMININ-RELATED	0.93	positive
g27054.t1	CADHERIN-23	0.92	positive
g5348.t1	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	0.92	positive
g5425.t1	SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN	0.92	positive
g3887.t1	F-BOX ONLY PROTEIN 15	0.92	positive
g14084.t1	CYTOCHROME P450 26	0.92	positive
g7240.t1	--	0.92	positive
g27572.t1	6-PHOSPHOGLUCONATE DEHYDROGENASE	0.91	positive
g11627.t1	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	0.91	positive
g10523.t1	HELIX LOOP HELIX PROTEIN 21-RELATED	0.90	positive
g30676.t1	--	0.90	positive
g4278.t1	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	0.90	positive
g2141.t1	INTEGRAL MEMBRANE PROTEIN GPR137	0.89	positive
g12083.t1	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 16	0.89	positive
g25769.t1	LOC100145250 PROTEIN	0.79	positive
g17827.t1	--	0.78	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 63 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g14084.t1 g7240.t1
g27054.t1 g5425.t1
g7240.t1 g3887.t1
g27572.t1 g7240.t1
g28413.t1 g11627.t1
g28413.t1 g160.t1
g11320.t1 g7240.t1
g11320.t1 g10836.t1
g14084.t1 g11320.t1
g27054.t1 g11627.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.