Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g16689.t1 | RETROTRANSPOSON | 1 | positive |
| g26559.t1 | PROTEIN CBG26694 | 0.96 | positive |
| g89.t1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 0.94 | positive |
| g31652.t1 | -- | 0.94 | positive |
| g34816.t1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE | 0.90 | positive |
| g31261.t1 | -- | 0.89 | positive |
| g10094.t1 | -- | 0.89 | positive |
| g10673.t1 | -- | 0.89 | positive |
| g1120.t1 | RETROTRANSPOSON | 0.89 | positive |
| g11752.t1 | -- | 0.89 | positive |
| g12077.t1 | MYOSIN LIGHT CHAIN 1, 3 | 0.89 | positive |
| g12537.t1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE | 0.89 | positive |
| g13469.t1 | -- | 0.89 | positive |
| g1396.t1 | -- | 0.89 | positive |
| g14051.t1 | -- | 0.89 | positive |
| g14817.t1 | -- | 0.89 | positive |
| g14963.t1 | -- | 0.89 | positive |
| g15443.t1 | -- | 0.89 | positive |
| g15532.t1 | UNCHARACTERIZED | 0.89 | positive |
| g16709.t1 | -- | 0.89 | positive |
| g16956.t1 | RETROTRANSPOSON | 0.89 | positive |
| g17036.t1 | -- | 0.89 | positive |
| g17197.t1 | PROTEIN CBG26694 | 0.89 | positive |
| g17841.t1 | PROTEIN CBG26694 | 0.89 | positive |
| g18235.t1 | -- | 0.89 | positive |
| g19041.t1 | -- | 0.89 | positive |
| g19354.t1 | -- | 0.89 | positive |
| g19499.t1 | -- | 0.89 | positive |
| g19641.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | 0.89 | positive |
| g20020.t1 | -- | 0.89 | positive |
| g20073.t1 | -- | 0.89 | positive |
| g20162.t1 | -- | 0.89 | positive |
| g20163.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g20481.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.89 | positive |
| g20778.t1 | -- | 0.89 | positive |
| g21040.t1 | -- | 0.89 | positive |
| g21364.t1 | RETROTRANSPOSON | 0.89 | positive |
| g21400.t1 | -- | 0.89 | positive |
| g21676.t1 | -- | 0.89 | positive |
| g22399.t1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g22737.t1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g23075.t1 | -- | 0.89 | positive |
| g23101.t1 | -- | 0.89 | positive |
| g23260.t1 | -- | 0.89 | positive |
| g23529.t1 | DNA HELICASE RECQ FAMILY MEMBER | 0.89 | positive |
| g23566.t1 | CARBOHYDRATE SULFOTRANSFERASE | 0.89 | positive |
| g24359.t1 | TYROSINE-PROTEIN KINASE RECEPTOR | 0.89 | positive |
| g24561.t1 | -- | 0.89 | positive |
| g24644.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | 0.89 | positive |
| g24749.t1 | -- | 0.89 | positive |
| g24795.t1 | MOLTING PROTEIN MLT-4 | 0.89 | positive |
| g25313.t1 | PROTEIN CBG23806 | 0.89 | positive |
| g25375.t1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 0.89 | positive |
| g25731.t1 | APPLE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g25789.t1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g26099.t1 | -- | 0.89 | positive |
| g26182.t1 | -- | 0.89 | positive |
| g26374.t1 | -- | 0.89 | positive |
| g26638.t1 | RETROTRANSPOSON | 0.89 | positive |
| g27946.t1 | -- | 0.89 | positive |
| g28099.t1 | -- | 0.89 | positive |
| g28519.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.89 | positive |
| g29025.t1 | -- | 0.89 | positive |
| g29245.t1 | -- | 0.89 | positive |
| g29257.t1 | -- | 0.89 | positive |
| g29315.t1 | PROTEIN CBG26694 | 0.89 | positive |
| g29390.t1 | ATP-DEPENDENT DNA HELICASE | 0.89 | positive |
| g29646.t1 | -- | 0.89 | positive |
| g29705.t1 | BETA TRANSDUCIN-RELATED PROTEIN | 0.89 | positive |
| g30246.t1 | - | 0.89 | positive |
| g30589.t1 | OTU DOMAIN CONTAINING PROTEIN | 0.89 | positive |
| g31099.t1 | -- | 0.89 | positive |
| g32050.t1 | -- | 0.89 | positive |
| g32609.t1 | -- | 0.89 | positive |
| g32744.t1 | -- | 0.89 | positive |
| g3289.t1 | -- | 0.89 | positive |
| g32991.t1 | -- | 0.89 | positive |
| g33134.t1 | - | 0.89 | positive |
| g33219.t1 | -- | 0.89 | positive |
| g33890.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g3395.t1 | -- | 0.89 | positive |
| g34282.t1 | -- | 0.89 | positive |
| g34755.t1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 | 0.89 | positive |
| g35130.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED | 0.89 | positive |
| g35326.t1 | SI:CH211-108C17.2-RELATED-RELATED | 0.89 | positive |
| g35703.t1 | -- | 0.89 | positive |
| g36265.t1 | -- | 0.89 | positive |
| g36589.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | 0.89 | positive |
| g4333.t1 | -- | 0.89 | positive |
| g5127.t1 | -- | 0.89 | positive |
| g5971.t1 | -- | 0.89 | positive |
| g6147.t1 | PROTEIN CBG26694 | 0.89 | positive |
| g6299.t1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g6542.t1 | FLAP ENDONUCLEASE FAMILY MEMBER | 0.89 | positive |
| g6615.t1 | -- | 0.89 | positive |
| g7009.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 | 0.89 | positive |
| g7460.t1 | THAP DOMAIN PROTEIN | 0.89 | positive |
| g7687.t1 | PROTEIN CBG26694 | 0.89 | positive |
| g7851.t1 | -- | 0.89 | positive |
| g8295.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED | 0.89 | positive |
| g8849.t1 | -- | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 4852 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
