Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g16765.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 1 | positive |
| g16285.t1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 0.97 | positive |
| g619.t1 | - | 0.96 | positive |
| g12287.t1 | NETRIN/LAMININ-RELATED | 0.96 | positive |
| g12003.t1 | -- | 0.96 | positive |
| g27347.t1 | PROTEIN CBG16200 | 0.96 | positive |
| g8971.t1 | -- | 0.96 | positive |
| g7552.t1 | RHO-TYPE GTPASE ACTIVATING PROTEIN | 0.96 | positive |
| g2934.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | 0.96 | positive |
| g23603.t1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO | 0.96 | positive |
| g19148.t1 | HOMEOBOX PROTEIN MOX | 0.96 | positive |
| g7350.t1 | PERICENTRIN-LIKE PROTEIN, ISOFORM F | 0.96 | positive |
| g1428.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.96 | positive |
| g27061.t1 | RAB GDP-DISSOCIATION INHIBITOR | 0.95 | positive |
| g11655.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 | 0.95 | positive |
| g2885.t1 | TYROSINE-PROTEIN KINASE | 0.95 | positive |
| g27740.t1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED | 0.95 | positive |
| g6459.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.95 | positive |
| g23578.t1 | - | 0.95 | positive |
| g14500.t1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 0.95 | positive |
| g12968.t1 | -- | 0.95 | positive |
| g12582.t1 | NUCLEOREDOXIN | 0.95 | positive |
| g18490.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN | 0.94 | positive |
| g18267.t1 | TRANSCRIPTION ELONGATION FACTOR SPT6 | 0.94 | positive |
| g35047.t1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN | 0.94 | positive |
| g30049.t1 | KINESIN-LIKE PROTEIN KLP-3 | 0.94 | positive |
| g3327.t1 | - | 0.94 | positive |
| g27960.t1 | LIM/HOMEOBOX PROTEIN LHX | 0.94 | positive |
| g10302.t1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 119 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
