Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g17002.t1 | PTD012 PROTEIN | 1 | positive |
| g5139.t1 | GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 | 0.98 | positive |
| g25904.t1 | -- | 0.97 | positive |
| g20308.t1 | EH DOMAIN | 0.97 | positive |
| g29450.t1 | UNCHARACTERIZED | 0.97 | positive |
| g28163.t1 | NUCLEAR-INTERACTING PARTNER OF ALK | 0.97 | positive |
| g5598.t1 | TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT | 0.97 | positive |
| g10575.t1 | SERINE/THREONINE-PROTEIN KINASE | 0.96 | positive |
| g18458.t1 | TIMELESS INTERACTING-RELATED | 0.96 | positive |
| g3752.t1 | -- | 0.96 | positive |
| g34950.t1 | TELOMERE-ASSOCIATED PROTEIN RIF1 | 0.96 | positive |
| g7901.t1 | -- | 0.96 | positive |
| g35257.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g3229.t1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 0.96 | positive |
| g21940.t1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE | 0.96 | positive |
| g5160.t1 | -- | 0.96 | positive |
| g10325.t1 | RIBONUCLEASE P SUBUNIT P25 | 0.96 | positive |
| g10066.t1 | -- | 0.96 | positive |
| g4144.t1 | -- | 0.95 | positive |
| g16900.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 0.95 | positive |
| g3501.t1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F | 0.95 | positive |
| g358.t1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN | 0.95 | positive |
| g19121.t1 | -- | 0.95 | positive |
| g15389.t1 | -- | 0.95 | positive |
| g14410.t1 | POLYPHOSPHOINOSITIDE PHOSPHATASE | 0.95 | positive |
| g3641.t1 | SNF2/RAD54 FAMILY MEMBER | 0.95 | positive |
| g9074.t1 | 80 KDA MCM3-ASSOCIATED PROTEIN | 0.95 | positive |
| g2174.t1 | UNCHARACTERIZED | 0.94 | positive |
| g8776.t1 | STROMAL ANTIGEN | 0.94 | positive |
| g16872.t1 | SUZ DOMAIN-CONTAINING PROTEIN 1 | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 177 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
