Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g17387.t1 | -- | 1 | positive |
| g6623.t1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 | 0.95 | positive |
| g3887.t1 | F-BOX ONLY PROTEIN 15 | 0.94 | positive |
| g22684.t1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | 0.93 | positive |
| g16775.t1 | SHC TRANSFORMING PROTEIN | 0.93 | positive |
| g23794.t1 | ALPHA CATENIN | 0.93 | positive |
| g8971.t1 | -- | 0.93 | positive |
| g27347.t1 | PROTEIN CBG16200 | 0.93 | positive |
| g28145.t1 | SPECKLE-TYPE POZ PROTEIN | 0.93 | positive |
| g7240.t1 | -- | 0.92 | positive |
| g28413.t1 | -- | 0.92 | positive |
| g10581.t1 | 50S RIBOSOMAL PROTEIN L3 | 0.92 | positive |
| g29995.t1 | CAMK FAMILY PROTEIN KINASE | 0.92 | positive |
| g13338.t1 | HERMANSKY-PUDLAK SYNDROME 3 PROTEIN | 0.92 | positive |
| g28219.t1 | -- | 0.92 | positive |
| g34827.t1 | UNCHARACTERIZED PROTEIN KIAA2013 | 0.92 | positive |
| g25555.t1 | CULLIN | 0.92 | positive |
| g27968.t1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS | 0.92 | positive |
| g11627.t1 | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 0.91 | positive |
| g34859.t1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 0.91 | positive |
| g32426.t1 | -- | 0.90 | positive |
| g4207.t1 | BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN | 0.90 | positive |
| g9045.t1 | DED DOMAIN-CONTAINING PROTEIN | 0.84 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 61 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
