Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g17799.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g17799.t1
Gene ID Description PCC Relationship
g17799.t1PIKACHURIN-LIKE PROTEIN1positive
g10187.t1TRANSMEMBRANE PROTEIN 1170.99positive
g520.t1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED0.99positive
g15256.t1COLLAGEN ALPHA0.99positive
g29735.t1--0.99positive
g25713.t1--0.98positive
g17124.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN0.98positive
g19159.t1ZGC:1942420.98positive
g6422.t1--0.98positive
g2069.t1COLLAGEN ALPHA0.98positive
g7074.t1IDURONATE 2-SULFATASE0.98positive
g343.t1PECANEX0.98positive
g27985.t1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING0.98positive
g32332.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED0.98positive
g4203.t1COLLAGEN ALPHA0.98positive
g25336.t1OXIDASE/PEROXIDASE0.98positive
g31620.t1CONTACTIN 50.98positive
g14614.t1TGF-BETA FAMILY0.98positive
g8753.t1--0.98positive
g58.t1MONOCARBOXYLATE TRANSPORTER0.98positive
g10497.t1DIACYLGLYCEROL O-ACYLTRANSFERASE0.98positive
g9771.t1TUMOR NECROSIS FACTOR RECEPTOR0.98positive
g7230.t1HOMEOBOX PROTEIN NKX0.98positive
g21477.t1RAN GTPASE-ACTIVATING PROTEIN 10.98positive
g3564.t1--0.98positive
g4618.t1HEPARAN SULFATE SULFOTRANSFERASE0.97positive
g15062.t1LEUCOKININ RECEPTOR-RELATED0.97positive
g27726.t1P2X PURINOCEPTOR0.97positive
g889.t1METABOTROPIC GLUTAMATE RECEPTOR0.97positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 111 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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