Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g18403.t1 | BLOC-1-RELATED COMPLEX SUBUNIT 7 BORSC7 | 1 | positive |
| g5285.t1 | SERINE/THREONINE PROTEIN PHOSPHATASE | 0.97 | positive |
| g32280.t1 | CYCLIN D1-BINDING PROTEIN 1 | 0.96 | positive |
| g66.t1 | PATCHED-RELATED | 0.96 | positive |
| g12008.t1 | -- | 0.96 | positive |
| g22700.t1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN | 0.96 | positive |
| g27714.t1 | -- | 0.96 | positive |
| g4054.t1 | SORTING NEXIN | 0.96 | positive |
| g7052.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 0.96 | positive |
| g35281.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 0.96 | positive |
| g3116.t1 | UNCHARACTERIZED | 0.96 | positive |
| g13218.t1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE | 0.96 | positive |
| g29357.t1 | SIDEROFLEXIN | 0.95 | positive |
| g2803.t1 | IP01015P-RELATED | 0.95 | positive |
| g4703.t1 | -- | 0.95 | positive |
| g22814.t1 | RIKEN CDNA 6820408C15 | 0.95 | positive |
| g15522.t1 | RIBONUCLEASE H2 SUBUNIT B | 0.95 | positive |
| g8887.t1 | ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 | 0.95 | positive |
| g22283.t1 | -- | 0.95 | positive |
| g29451.t1 | -- | 0.94 | positive |
| g10814.t1 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED | 0.94 | positive |
| g10453.t1 | -- | 0.92 | positive |
| g35861.t1 | DNA HELICASE RECQ FAMILY MEMBER | 0.91 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 87 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
