Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g19186.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g19186.t1
Gene ID Description PCC Relationship
g19186.t1TNF RECEPTOR ASSOCIATED FACTOR1positive
g1847.t1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM0.99positive
g23538.t1--0.99positive
g4517.t1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR0.99positive
g35252.t1CYSTEINE-RICH SECRETORY PROTEIN-RELATED0.99positive
g1533.t1NUCLEAR HORMONE RECEPTOR0.99positive
g7720.t1AMINO ACID TRANSPORTER0.99positive
g23600.t1G PROTEIN-COUPLED RECEPTOR0.99positive
g16902.t1IONOTROPIC GLUTAMATE RECEPTOR0.99positive
g19262.t1--0.99positive
g7515.t1GNAT FAMILY N-ACETYLTRANSFERASE0.99positive
g29041.t1REGULATOR OF G PROTEIN SIGNALING0.99positive
g10112.t1CENTROSOMAL PROTEIN 20.99positive
g7280.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED0.99positive
g14021.t15-HYDROXYTRYPTAMINE RECEPTOR0.99positive
g17486.t1--0.99positive
g4055.t1--0.99positive
g2432.t1NEUROTRANSMITTER GATED ION CHANNEL0.99positive
g11889.t1PROSTAGLANDIN G/H SYNTHASE0.99positive
g12097.t1--0.99positive
g7170.t1MONOCARBOXYLATE TRANSPORTER0.99positive
g2538.t1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM0.99positive
g12791.t1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN0.98positive
g16736.t1AMINO ACID TRANSPORTER0.98positive
g27025.t1--0.98positive
g3424.t1LEUCINE RICH REPEAT FAMILY PROTEIN0.98positive
g2384.t1SET AND MYND DOMAIN-CONTAINING PROTEIN 40.98positive
g16807.t1--0.98positive
g4559.t1--0.98positive
g25392.t1MONOCARBOXYLATE TRANSPORTER0.96positive
g15762.t1--0.95positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 100 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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