Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g19447.t1 | TARGETING PROTEIN FOR XKLP2 | 1 | positive |
| g1454.t1 | DRAB5-RELATED | 0.98 | positive |
| g3735.t1 | -- | 0.98 | positive |
| g17234.t1 | KINESIN-LIKE PROTEIN KLP-3 | 0.97 | positive |
| g11429.t1 | UNCHARACTERIZED | 0.97 | positive |
| g95.t1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 0.97 | positive |
| g34764.t1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED | 0.97 | positive |
| g23612.t1 | CHEMOKINE C-C MOTIF RECEPTOR 1 | 0.97 | positive |
| g4727.t1 | HISTONE H3 | 0.97 | positive |
| g18087.t1 | HISTONE H2A | 0.96 | positive |
| g16081.t1 | T-BOX PROTEIN-RELATED | 0.96 | positive |
| g29808.t1 | SCHLAFEN | 0.96 | positive |
| g34963.t1 | MYC PROTO-ONCOGENE | 0.96 | positive |
| g49.t1 | RED PROTEIN IK FACTOR CYTOKINE IK | 0.96 | positive |
| g6553.t1 | SCAFFOLD ATTACHMENT FACTOR B-RELATED | 0.96 | positive |
| g5654.t1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B | 0.96 | positive |
| g15745.t1 | PROTEIN IWS1 HOMOLOG | 0.96 | positive |
| g21423.t1 | -- | 0.95 | positive |
| g7396.t1 | CYTOCHROME B5 | 0.95 | positive |
| g23651.t1 | SPLICING FACTOR 3B SUBUNIT 4 | 0.95 | positive |
| g31971.t1 | UNCHARACTERIZED | 0.95 | positive |
| g21523.t1 | ZINC FINGER PROTEIN ZIC AND GLI | 0.95 | positive |
| g14630.t1 | -- | 0.95 | positive |
| g10489.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 0.94 | positive |
| g14440.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 0.94 | positive |
| g3112.t1 | TRIHELIX TRANSCRIPTION FACTOR ASIL2 | 0.94 | positive |
| g27178.t1 | RNA-BINDING PROTEIN RELATED | 0.94 | positive |
| g5293.t1 | AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN | 0.94 | positive |
| g27841.t1 | HIGH MOBILITY GROUP PROTEIN DSP1 | 0.94 | positive |
| g31105.t1 | PUTATIVE-RELATED | 0.94 | positive |
| g23741.t1 | -- | 0.94 | positive |
| g18089.t1 | HISTONE H3 | 0.94 | positive |
| g27038.t1 | MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 | 0.93 | positive |
| g989.t1 | FI02826P | 0.93 | positive |
| g22179.t1 | IQ DOMAIN-CONTAINING PROTEIN D | 0.93 | positive |
| g8877.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING | 0.93 | positive |
| g8693.t1 | CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR | 0.93 | positive |
| g20511.t1 | RAS-RELATED PROTEIN RAB | 0.93 | positive |
| g14078.t1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER | 0.93 | positive |
| g5545.t1 | CXYORF1 | 0.92 | positive |
| g25807.t1 | NEUROTRANSMITTER GATED ION CHANNEL | 0.92 | positive |
| g11038.t1 | HELIX LOOP HELIX PROTEIN 21-RELATED | 0.91 | positive |
| g13224.t1 | UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER | 0.91 | positive |
| g16629.t1 | ADP-DEPENDENT GLUCOKINASE | 0.90 | positive |
| g11558.t1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL | 0.90 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 303 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
