Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g19647.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g19647.t1

Gene ID	Description	PCC	Relationship
g19647.t1	ACYL-COA-BINDING PROTEIN, ACBP	1	positive
g5463.t1	S-FORMYLGLUTATHIONE HYDROLASE	0.98	positive
g15831.t1	PEROXIREDOXIN	0.98	positive
g8878.t1	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10	0.96	positive
g11346.t1	ALDO/KETO REDUCTASE	0.96	positive
g14773.t1	RTDR1	0.96	positive
g15083.t1	NUCLEOSIDE DIPHOSPHATE KINASE	0.96	positive
g14945.t1	CALBINDIN	0.95	positive
g23006.t1	ARP2/3 COMPLEX 34 KDA SUBUNIT	0.95	positive
g27172.t1	--	0.95	positive
g516.t1	NEPHROCYSTIN	0.95	positive
g15394.t1	PROTEIN CBG20488	0.95	positive
g3940.t1	UNCHARACTERIZED	0.94	positive
g4078.t1	O-METHYLTRANSFERASE-RELATED	0.94	positive
g27173.t1	NYD-SP28 PROTEIN	0.94	positive
g18366.t1	ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE	0.94	positive
g6172.t1	DYNEIN REGULATORY COMPLEX SUBUNIT 7	0.94	positive
g4960.t1	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	0.94	positive
g28697.t1	A-KINASE ANCHOR PROTEIN 14	0.94	positive
g34967.t1	GTP-BINDING PROTEIN-RELATED	0.93	positive
g11027.t1	ENOLASE	0.93	positive
g6915.t1	UNCHARACTERIZED	0.93	positive
g27128.t1	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR	0.93	positive
g26208.t1	COILED-COIL DOMAIN-CONTAINING PROTEIN 89	0.92	positive
g30396.t1	MSF1/PX19 RELATED	0.92	positive
g27003.t1	RAGULATOR COMPLEX PROTEIN LAMTOR4	0.92	positive
g10319.t1	UNCHARACTERIZED	0.92	positive
g16449.t1	--	0.92	positive
g34702.t1	FERRITIN	0.88	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 122 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g19647.t1 g5463.t1
g19647.t1 g15831.t1
g15831.t1 g5463.t1
g11346.t1 g516.t1
g15394.t1 g4960.t1
g5463.t1 g4960.t1
g34967.t1 g11027.t1
g15394.t1 g5463.t1
g15831.t1 g11346.t1
g15831.t1 g8878.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.