Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g20306.t1 | UNCHARACTERIZED | 1 | positive |
| g6832.t1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL | 0.98 | positive |
| g35262.t1 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE | 0.98 | positive |
| g16307.t1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT | 0.98 | positive |
| g17650.t1 | STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 | 0.97 | positive |
| g6335.t1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER | 0.97 | positive |
| g6629.t1 | KINESIN-ASSOCIATED PROTEINS | 0.97 | positive |
| g27840.t1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | 0.97 | positive |
| g4844.t1 | -- | 0.97 | positive |
| g2959.t1 | E3 UBIQUITIN-PROTEIN LIGASE PPP1R11-RELATED | 0.97 | positive |
| g1630.t1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN | 0.97 | positive |
| g17122.t1 | NUCLEOLAR PROTEIN 8 | 0.96 | positive |
| g12274.t1 | ATP-CITRATE SYNTHASE | 0.96 | positive |
| g25456.t1 | SERYL-TRNA SYNTHETASE | 0.96 | positive |
| g11356.t1 | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN | 0.96 | positive |
| g14667.t1 | PROTEIN SIDEKICK | 0.96 | positive |
| g26470.t1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF | 0.96 | positive |
| g363.t1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED | 0.96 | positive |
| g35064.t1 | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN | 0.96 | positive |
| g14901.t1 | TRANSLATION INITIATION FACTOR EIF-2B | 0.96 | positive |
| g8379.t1 | V-TYPE PROTON ATPASE SUBUNIT B | 0.96 | positive |
| g27209.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD | 0.96 | positive |
| g5627.t1 | ALPHA-PROTEIN KINASE VWKA | 0.96 | positive |
| g3077.t1 | EXPRESSED PROTEIN | 0.96 | positive |
| g12582.t1 | NUCLEOREDOXIN | 0.95 | positive |
| g12782.t1 | FLAVIN REDUCTASE-RELATED | 0.95 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 104 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
