Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g20801.t1 | WD REPEAT-CONTAINING PROTEIN 55 | 1 | positive |
| g27949.t1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED | 0.94 | positive |
| g19028.t1 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN | 0.92 | positive |
| g5379.t1 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g31982.t1 | PESCADILLO - RELATED | 0.89 | positive |
| g10422.t1 | DNA HELICASE RECQ FAMILY MEMBER | 0.89 | positive |
| g19552.t1 | SEC31-RELATED PROTEIN | 0.88 | positive |
| g24048.t1 | PROTEASOME MATURATION PROTEIN UMP1 | 0.86 | positive |
| g4204.t1 | WD40 REPEAT PROTEIN | 0.85 | positive |
| g31561.t1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED | 0.85 | positive |
| g1544.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.84 | positive |
| g30915.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.84 | positive |
| g1466.t1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 | 0.83 | positive |
| g30302.t1 | TOLL-INTERACTING PROTEIN | 0.83 | positive |
| g11946.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 31 | 0.83 | positive |
| g14202.t1 | KIAA0586 PROTEIN | 0.83 | positive |
| g5657.t1 | RING FINGER PROTEIN 17 | 0.83 | positive |
| g1691.t1 | DUF4605 DOMAIN-CONTAINING PROTEIN | 0.82 | positive |
| g8748.t1 | MEMBRALIN/KINETOCHORE PROTEIN NUF2 | 0.82 | positive |
| g5565.t1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING | 0.81 | positive |
| g3217.t1 | GPALPP MOTIFS-CONTAINING PROTEIN 1 | 0.81 | positive |
| g17854.t1 | 50S RIBOSOMAL PROTEIN L21 | 0.80 | positive |
| g13063.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER | 0.80 | positive |
| g11944.t1 | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN | 0.80 | positive |
| g34987.t1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 | 0.79 | positive |
| g2198.t1 | APOPTOSIS-INDUCING FACTOR 1 | 0.78 | positive |
| g7881.t1 | RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 | 0.77 | positive |
| g34217.t1 | DUF3504 DOMAIN-CONTAINING PROTEIN | 0.74 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 174 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
