Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g2119.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g2119.t1
Gene ID Description PCC Relationship
g2119.t1--1positive
g12087.t1--0.99positive
g1993.t1--0.99positive
g10202.t1--0.99positive
g12125.t1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR0.99positive
g7597.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED0.99positive
g1280.t1TESTIS-EXPRESSED PROTEIN 360.98positive
g4737.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 1050.98positive
g9301.t1COILED-COIL DOMAIN CONTAINING 1980.98positive
g15038.t1--0.98positive
g8486.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.98positive
g14192.t1CHROMOSOME 20 ORF85 FAMILY MEMBER0.98positive
g26997.t1UNCHARACTERIZED0.98positive
g7216.t1NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR0.98positive
g2521.t1REGULATOR OF G-PROTEIN SIGNALING 220.98positive
g2961.t1CLATHRIN HEAVY CHAIN RELATED0.98positive
g6324.t1SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 10.98positive
g14804.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR0.98positive
g5482.t1C5ORF310.98positive
g964.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED0.98positive
g12086.t1--0.98positive
g4618.t1HEPARAN SULFATE SULFOTRANSFERASE0.98positive
g24516.t1TESTIS-EXPRESSED PROTEIN 26 ISOFORM X30.98positive
g27138.t1DYNEIN INTERMEDIATE CHAIN0.98positive
g3895.t115-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]0.98positive
g7566.t1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 510.98positive
g32332.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED0.98positive
g23442.t1--0.94positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 176 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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